feat: use Jackson 3 for JSON serde (#286)

12 files changed, 166 insertions, 4 deletions

diff --git a/src/main/java/dev/dnpm/etl/processor/consent/AbstractConsentService.java b/src/main/java/dev/dnpm/etl/processor/consent/AbstractConsentService.java
index 5c9878c..1dcb74e 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/AbstractConsentService.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/AbstractConsentService.java
@@ -2,7 +2,7 @@
  * This file is part of ETL-Processor
  *
  * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
- * Copyright (c) 2023-2025  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2023-2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
diff --git a/src/main/java/dev/dnpm/etl/processor/consent/ConsentDomain.java b/src/main/java/dev/dnpm/etl/processor/consent/ConsentDomain.java
index e339ba4..9c0359a 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/ConsentDomain.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/ConsentDomain.java
@@ -1,3 +1,23 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
 package dev.dnpm.etl.processor.consent;
 
 public enum ConsentDomain {
diff --git a/src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java b/src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java
index d445182..20fa3c4 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java
@@ -1,3 +1,23 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
 package dev.dnpm.etl.processor.consent;
 
 import dev.dnpm.etl.processor.config.AppFhirConfig;
diff --git a/src/main/java/dev/dnpm/etl/processor/consent/GicsGetBroadConsentService.java b/src/main/java/dev/dnpm/etl/processor/consent/GicsGetBroadConsentService.java
index d657306..2439e44 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/GicsGetBroadConsentService.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/GicsGetBroadConsentService.java
@@ -1,3 +1,23 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
 package dev.dnpm.etl.processor.consent;
 
 import dev.dnpm.etl.processor.config.AppFhirConfig;
diff --git a/src/main/java/dev/dnpm/etl/processor/consent/IConsentService.java b/src/main/java/dev/dnpm/etl/processor/consent/IConsentService.java
index f9230ec..43c000c 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/IConsentService.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/IConsentService.java
@@ -1,3 +1,23 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
 package dev.dnpm.etl.processor.consent;
 
 import java.util.Date;
diff --git a/src/main/java/dev/dnpm/etl/processor/consent/MiiBroadConsentEvaluator.java b/src/main/java/dev/dnpm/etl/processor/consent/MiiBroadConsentEvaluator.java
index c815f7a..28ee6be 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/MiiBroadConsentEvaluator.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/MiiBroadConsentEvaluator.java
@@ -2,7 +2,7 @@
  * This file is part of ETL-Processor
  *
  * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
- * Copyright (c) 2023-2025  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2023-2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
diff --git a/src/main/java/dev/dnpm/etl/processor/consent/MtbFileConsentService.java b/src/main/java/dev/dnpm/etl/processor/consent/MtbFileConsentService.java
index cc8107f..db9d690 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/MtbFileConsentService.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/MtbFileConsentService.java
@@ -1,3 +1,23 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
 package dev.dnpm.etl.processor.consent;
 
 import java.util.Date;
diff --git a/src/main/java/dev/dnpm/etl/processor/consent/TtpConsentStatus.java b/src/main/java/dev/dnpm/etl/processor/consent/TtpConsentStatus.java
index b92f58d..7aacb20 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/TtpConsentStatus.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/TtpConsentStatus.java
@@ -1,3 +1,23 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
 package dev.dnpm.etl.processor.consent;
 
 public enum TtpConsentStatus {
diff --git a/src/main/java/dev/dnpm/etl/processor/pseudonym/Generator.java b/src/main/java/dev/dnpm/etl/processor/pseudonym/Generator.java
index e72a8f8..79e90db 100644
--- a/src/main/java/dev/dnpm/etl/processor/pseudonym/Generator.java
+++ b/src/main/java/dev/dnpm/etl/processor/pseudonym/Generator.java
@@ -1,7 +1,8 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2023  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2023-2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
diff --git a/src/main/java/dev/dnpm/etl/processor/pseudonym/GpasPseudonymGenerator.java b/src/main/java/dev/dnpm/etl/processor/pseudonym/GpasPseudonymGenerator.java
index 478c5c9..b4641aa 100644
--- a/src/main/java/dev/dnpm/etl/processor/pseudonym/GpasPseudonymGenerator.java
+++ b/src/main/java/dev/dnpm/etl/processor/pseudonym/GpasPseudonymGenerator.java
@@ -1,7 +1,8 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2024-2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
diff --git a/src/main/java/dev/dnpm/etl/processor/pseudonym/PseudonymRequestFailed.java b/src/main/java/dev/dnpm/etl/processor/pseudonym/PseudonymRequestFailed.java
index 397455a..b1a215e 100644
--- a/src/main/java/dev/dnpm/etl/processor/pseudonym/PseudonymRequestFailed.java
+++ b/src/main/java/dev/dnpm/etl/processor/pseudonym/PseudonymRequestFailed.java
@@ -1,3 +1,23 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
 package dev.dnpm.etl.processor.pseudonym;
 
 public class PseudonymRequestFailed extends RuntimeException {
diff --git a/src/main/java/dev/dnpm/etl/processor/pseudonym/PsnDomainType.java b/src/main/java/dev/dnpm/etl/processor/pseudonym/PsnDomainType.java
index 55cb212..b1cec26 100644
--- a/src/main/java/dev/dnpm/etl/processor/pseudonym/PsnDomainType.java
+++ b/src/main/java/dev/dnpm/etl/processor/pseudonym/PsnDomainType.java
@@ -1,3 +1,23 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023       Comprehensive Cancer Center Mainfranken
+ * Copyright (c) 2026  Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
 package dev.dnpm.etl.processor.pseudonym;
 
 public enum PsnDomainType {