chore: update dnpm mtb dto library (#113)

4 files changed, 2635 insertions, 2266 deletions

diff --git a/src/test/kotlin/dev/dnpm/etl/processor/output/KafkaMtbFileSenderTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/output/KafkaMtbFileSenderTest.kt
index e5fb925..f1185ef 100644
--- a/src/test/kotlin/dev/dnpm/etl/processor/output/KafkaMtbFileSenderTest.kt
+++ b/src/test/kotlin/dev/dnpm/etl/processor/output/KafkaMtbFileSenderTest.kt
@@ -44,6 +44,8 @@ import org.springframework.kafka.core.KafkaTemplate
 import org.springframework.kafka.support.SendResult
 import org.springframework.retry.policy.SimpleRetryPolicy
 import org.springframework.retry.support.RetryTemplateBuilder
+import java.time.Instant
+import java.util.*
 import java.util.concurrent.CompletableFuture.completedFuture
 import java.util.concurrent.ExecutionException
 
@@ -309,24 +311,28 @@ class KafkaMtbFileSenderTest {
             }.build()
         }
 
-        fun dnpmV2MtbFile(): Mtb = Mtb.builder()
-            .withPatient(
-                dev.pcvolkmer.mv64e.mtb.Patient.builder()
-                    .withId("PID")
-                    .withBirthDate("2000-08-08")
-                    .withGender(CodingGender.builder().withCode(CodingGender.Code.MALE).build())
-                    .build()
-            )
-            .withEpisodesOfCare(
-                listOf(
-                    MTBEpisodeOfCare.builder()
-                        .withId("1")
-                        .withPatient(Reference("PID"))
-                        .withPeriod(PeriodDate.builder().withStart("2023-08-08").build())
-                        .build()
+        fun dnpmV2MtbFile(): Mtb {
+            return Mtb().apply {
+                this.patient = dev.pcvolkmer.mv64e.mtb.Patient().apply {
+                    this.id = "PID"
+                    this.birthDate = Date.from(Instant.now())
+                    this.gender = GenderCoding().apply {
+                        this.code = GenderCodingCode.MALE
+                    }
+                }
+                this.episodesOfCare = listOf(
+                    MtbEpisodeOfCare().apply {
+                        this.id = "1"
+                        this.patient = Reference().apply {
+                            this.id = "PID"
+                        }
+                        this.period = PeriodDate().apply {
+                            this.start = Date.from(Instant.now())
+                        }
+                    }
                 )
-            )
-            .build()
+            }
+        }
 
         fun bwhcV1kafkaRecordData(requestId: RequestId, consentStatus: Consent.Status): MtbRequest {
             return BwhcV1MtbFileRequest(requestId, bwhcV1MtbFile(consentStatus))
diff --git a/src/test/kotlin/dev/dnpm/etl/processor/output/RestDipMtbFileSenderTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/output/RestDipMtbFileSenderTest.kt
index b35fb47..8395518 100644
--- a/src/test/kotlin/dev/dnpm/etl/processor/output/RestDipMtbFileSenderTest.kt
+++ b/src/test/kotlin/dev/dnpm/etl/processor/output/RestDipMtbFileSenderTest.kt
@@ -49,6 +49,8 @@ import org.springframework.test.web.client.MockRestServiceServer
 import org.springframework.test.web.client.match.MockRestRequestMatchers.*
 import org.springframework.test.web.client.response.MockRestResponseCreators.withStatus
 import org.springframework.web.client.RestTemplate
+import java.time.Instant
+import java.util.*
 
 class RestDipMtbFileSenderTest {
 
@@ -155,7 +157,7 @@ class RestDipMtbFileSenderTest {
                     withStatus(requestWithResponse.httpStatus).body(requestWithResponse.body).createResponse(it)
                 }
 
-            val response = restMtbFileSender.send(DnpmV2MtbFileRequest(TEST_REQUEST_ID, dnpmV2MtbFile))
+            val response = restMtbFileSender.send(DnpmV2MtbFileRequest(TEST_REQUEST_ID, dnpmV2MtbFile()))
             assertThat(response.status).isEqualTo(requestWithResponse.response.status)
             assertThat(response.body).isEqualTo(requestWithResponse.response.body)
         }
@@ -267,24 +269,28 @@ class RestDipMtbFileSenderTest {
             )
             .build()
 
-        val dnpmV2MtbFile: Mtb = Mtb.builder()
-            .withPatient(
-                dev.pcvolkmer.mv64e.mtb.Patient.builder()
-                    .withId("PID")
-                    .withBirthDate("2000-08-08")
-                    .withGender(CodingGender.builder().withCode(CodingGender.Code.MALE).build())
-                    .build()
-            )
-            .withEpisodesOfCare(
-                listOf(
-                    MTBEpisodeOfCare.builder()
-                        .withId("1")
-                        .withPatient(Reference("PID"))
-                        .withPeriod(PeriodDate.builder().withStart("2023-08-08").build())
-                        .build()
+        fun dnpmV2MtbFile(): Mtb {
+            return Mtb().apply {
+                this.patient = dev.pcvolkmer.mv64e.mtb.Patient().apply {
+                    this.id = "PID"
+                    this.birthDate = Date.from(Instant.now())
+                    this.gender = GenderCoding().apply {
+                        this.code = GenderCodingCode.MALE
+                    }
+                }
+                this.episodesOfCare = listOf(
+                    MtbEpisodeOfCare().apply {
+                        this.id = "1"
+                        this.patient = Reference().apply {
+                            this.id = "PID"
+                        }
+                        this.period = PeriodDate().apply {
+                            this.start = Date.from(Instant.now())
+                        }
+                    }
                 )
-            )
-            .build()
+            }
+        }
 
         private const val ERROR_RESPONSE_BODY = "Sonstiger Fehler bei der Übertragung"
 
diff --git a/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt
index d0ccb2b..e30ee73 100644
--- a/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt
+++ b/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt
@@ -21,10 +21,8 @@ package dev.dnpm.etl.processor.pseudonym
 
 import com.fasterxml.jackson.databind.ObjectMapper
 import de.ukw.ccc.bwhc.dto.*
-import dev.pcvolkmer.mv64e.mtb.MTBEpisodeOfCare
-import dev.pcvolkmer.mv64e.mtb.Mtb
-import dev.pcvolkmer.mv64e.mtb.PeriodDate
-import dev.pcvolkmer.mv64e.mtb.Reference
+import de.ukw.ccc.bwhc.dto.Patient
+import dev.pcvolkmer.mv64e.mtb.*
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.Nested
 import org.junit.jupiter.api.Test
@@ -36,6 +34,8 @@ import org.mockito.kotlin.anyValueClass
 import org.mockito.kotlin.doAnswer
 import org.mockito.kotlin.whenever
 import org.springframework.core.io.ClassPathResource
+import java.time.Instant
+import java.util.*
 
 @ExtendWith(MockitoExtension::class)
 class ExtensionsTest {
@@ -207,7 +207,7 @@ class ExtensionsTest {
     inner class UsingDnpmV2Datamodel {
 
         val FAKE_MTB_FILE_PATH = "mv64e-mtb-fake-patient.json"
-        val CLEAN_PATIENT_ID = "63f8fd7b-8127-4f3c-8843-aa9199e21c29"
+        val CLEAN_PATIENT_ID = "e14bf9b6-7982-4933-a648-cfdea6484f1c"
 
         private fun fakeMtbFile(): Mtb {
             val mtbFile = ClassPathResource(FAKE_MTB_FILE_PATH).inputStream
@@ -244,32 +244,26 @@ class ExtensionsTest {
                 "TESTDOMAIN"
             }.whenever(pseudonymizeService).prefix()
 
-            val mtbFile = Mtb.builder()
-                .withPatient(
-                    dev.pcvolkmer.mv64e.mtb.Patient.builder()
-                        .withId("1")
-                        .withBirthDate("2000-08-08")
-                        .withGender(null)
-                        .build()
+            val mtbFile = Mtb().apply {
+                this.patient = dev.pcvolkmer.mv64e.mtb.Patient().apply {
+                    this.id = "PID"
+                    this.birthDate = Date.from(Instant.now())
+                    this.gender = GenderCoding().apply {
+                        this.code = GenderCodingCode.MALE
+                    }
+                }
+                this.episodesOfCare = listOf(
+                    MtbEpisodeOfCare().apply {
+                        this.id = "1"
+                        this.patient = Reference().apply {
+                            this.id = "PID"
+                        }
+                        this.period = PeriodDate().apply {
+                            this.start = Date.from(Instant.now())
+                        }
+                    }
                 )
-                .withEpisodesOfCare(
-                    listOf(
-                        MTBEpisodeOfCare.builder()
-                            .withId("1")
-                            .withPatient(Reference("1"))
-                            .withPeriod(PeriodDate.builder().withStart("2023-08-08").build())
-                            .build()
-                    )
-                )
-                .withClaims(null)
-                .withDiagnoses(null)
-                .withCarePlans(null)
-                .withClaimResponses(null)
-                .withHistologyReports(null)
-                .withNgsReports(null)
-                .withResponses(null)
-                .withSpecimens(null)
-                .build()
+            }
 
             mtbFile.pseudonymizeWith(pseudonymizeService)
             mtbFile.anonymizeContentWith(pseudonymizeService)
diff --git a/src/test/resources/mv64e-mtb-fake-patient.json b/src/test/resources/mv64e-mtb-fake-patient.json
index c82d951..5895be5 100644
--- a/src/test/resources/mv64e-mtb-fake-patient.json
+++ b/src/test/resources/mv64e-mtb-fake-patient.json
@@ -1,2243 +1,2606 @@
 {
-  "patient" : {
-    "id" : "63f8fd7b-8127-4f3c-8843-aa9199e21c29",
-    "gender" : {
-      "code" : "female",
-      "display" : "Weiblich",
-      "system" : "Gender"
-    },
-    "birthDate" : "1956-02-25",
-    "dateOfDeath" : "2007-02-25",
-    "healthInsurance" : {
-      "type" : {
-        "code" : "GKV",
-        "display" : "gesetzliche Krankenversicherung",
-        "system" : "http://fhir.de/CodeSystem/versicherungsart-de-basis"
-      },
-      "reference" : {
-        "id" : "1234567890",
-        "system" : "https://www.dguv.de/arge-ik",
-        "display" : "AOK",
-        "type" : "HealthInsurance"
+  "patient": {
+    "id": "e14bf9b6-7982-4933-a648-cfdea6484f1c",
+    "gender": {
+      "code": "male",
+      "display": "Männlich",
+      "system": "Gender"
+    },
+    "birthDate": "1993-08-01",
+    "healthInsurance": {
+      "type": {
+        "code": "GKV",
+        "display": "gesetzliche Krankenversicherung",
+        "system": "http://fhir.de/CodeSystem/versicherungsart-de-basis"
+      },
+      "reference": {
+        "id": "1234567890",
+        "system": "https://www.dguv.de/arge-ik",
+        "display": "AOK",
+        "type": "HealthInsurance"
       }
     },
-    "address" : {
-      "municipalityCode" : "12345"
+    "address": {
+      "municipalityCode": "12345"
     },
-    "age" : {
-      "value" : 51,
-      "unit" : "Years"
+    "age": {
+      "value": 31,
+      "unit": "Years"
     },
-    "vitalStatus" : {
-      "code" : "deceased",
-      "display" : "Verstorben",
-      "system" : "dnpm-dip/patient/vital-status"
+    "vitalStatus": {
+      "code": "alive",
+      "display": "Lebend",
+      "system": "dnpm-dip/patient/vital-status"
     }
   },
-  "episodesOfCare" : [ {
-    "id" : "a95f44a6-5dbb-4acd-9d52-05db10f8410b",
-    "patient" : {
-      "id" : "63f8fd7b-8127-4f3c-8843-aa9199e21c29",
-      "type" : "Patient"
-    },
-    "period" : {
-      "start" : "2024-10-03"
-    },
-    "diagnoses" : [ {
-      "id" : "744bf622-ba4b-4e64-867c-0807847d9da4",
-      "type" : "MTBDiagnosis"
-    } ]
-  } ],
-  "diagnoses" : [ {
-    "id" : "744bf622-ba4b-4e64-867c-0807847d9da4",
-    "patient" : {
-      "id" : "63f8fd7b-8127-4f3c-8843-aa9199e21c29",
-      "type" : "Patient"
-    },
-    "recordedOn" : "2004-01-25",
-    "type" : {
-      "history" : [ {
-        "value" : {
-          "code" : "main",
-          "display" : "Hauptdiagnose",
-          "system" : "dnpm-dip/mtb/diagnosis/type"
-        },
-        "date" : "2004-01-25"
-      } ]
-    },
-    "code" : {
-      "code" : "C69.0",
-      "display" : "Bösartige Neubildung: Konjunktiva",
-      "system" : "http://fhir.de/CodeSystem/bfarm/icd-10-gm",
-      "version" : "2025"
-    },
-    "topography" : {
-      "code" : "C69.0",
-      "display" : "Konjunktiva",
-      "system" : "urn:oid:2.16.840.1.113883.6.43.1",
-      "version" : "Zweite Revision"
-    },
-    "grading" : {
-      "history" : [ {
-        "date" : "2004-01-25",
-        "codes" : [ {
-          "code" : "U",
-          "display" : "U = unbekannt",
-          "system" : "https://www.basisdatensatz.de/feld/161/grading"
-        }, {
-          "code" : "4",
-          "display" : "Glioblastoma",
-          "system" : "dnpm-dip/mtb/who-grading-cns-tumors",
-          "version" : "2021"
-        } ]
-      } ]
-    },
-    "staging" : {
-      "history" : [ {
-        "date" : "2004-01-25",
-        "method" : {
-          "code" : "clinical",
-          "display" : "Klinisch",
-          "system" : "dnpm-dip/mtb/tumor-staging/method"
-        },
-        "tnmClassification" : {
-          "tumor" : {
-            "code" : "T1",
-            "system" : "UICC"
-          },
-          "nodes" : {
-            "code" : "N2",
-            "system" : "UICC"
-          },
-          "metastasis" : {
-            "code" : "Mx",
-            "system" : "UICC"
+  "episodesOfCare": [
+    {
+      "id": "dc4d1b2c-7468-4a4a-8fbd-1b0bb645c082",
+      "patient": {
+        "id": "e14bf9b6-7982-4933-a648-cfdea6484f1c",
+        "type": "Patient"
+      },
+      "period": {
+        "start": "2024-11-30"
+      },
+      "diagnoses": [
+        {
+          "id": "53155bb3-39f8-4cd9-aa9b-1675165bfdb8",
+          "type": "MTBDiagnosis"
+        }
+      ]
+    }
+  ],
+  "diagnoses": [
+    {
+      "id": "53155bb3-39f8-4cd9-aa9b-1675165bfdb8",
+      "patient": {
+        "id": "e14bf9b6-7982-4933-a648-cfdea6484f1c",
+        "type": "Patient"
+      },
+      "recordedOn": "2022-09-01",
+      "type": {
+        "history": [
+          {
+            "value": {
+              "code": "main",
+              "display": "Hauptdiagnose",
+              "system": "dnpm-dip/mtb/diagnosis/type"
+            },
+            "date": "2022-09-01"
           }
-        },
-        "otherClassifications" : [ {
-          "code" : "metastasized",
-          "display" : "Metastasiert",
-          "system" : "dnpm-dip/mtb/diagnosis/kds-tumor-spread"
-        } ]
-      } ]
-    },
-    "guidelineTreatmentStatus" : {
-      "code" : "non-exhausted",
-      "display" : "Leitlinien nicht ausgeschöpft",
-      "system" : "dnpm-dip/mtb/diagnosis/guideline-treatment-status"
-    },
-    "notes" : [ "Notes on the tumor diagnosis..." ]
-  } ],
-  "guidelineTherapies" : [ {
-    "id" : "a3a6a53f-d531-4f46-8697-9052d98cc9e5",
-    "patient" : {
-      "id" : "63f8fd7b-8127-4f3c-8843-aa9199e21c29",
-      "type" : "Patient"
-    },
-    "reason" : {
-      "id" : "744bf622-ba4b-4e64-867c-0807847d9da4",
-      "display" : "Bösartige Neubildung: Konjunktiva",
-      "type" : "MTBDiagnosis"
-    },
-    "therapyLine" : 2,
-    "intent" : {
-      "code" : "S",
-      "display" : "Sonstiges",
-      "system" : "dnpm-dip/therapy/intent"
-    },
-    "category" : {
-      "code" : "I",
-      "display" : "Intraopterativ",
-      "system" : "dnpm-dip/therapy/category"
-    },
-    "recordedOn" : "2025-04-03",
-    "status" : {
-      "code" : "stopped",
-      "display" : "Abgebrochen",
-      "system" : "dnpm-dip/therapy/status"
-    },
-    "statusReason" : {
-      "code" : "progression",
-      "display" : "Progression",
-      "system" : "dnpm-dip/therapy/status-reason"
-    },
-    "period" : {
-      "start" : "2023-08-03",
-      "end" : "2024-01-18"
-    },
-    "medication" : [ {
-      "code" : "L01EX24",
-      "display" : "Surufatinib",
-      "system" : "http://fhir.de/CodeSystem/bfarm/atc",
-      "version" : "2024"
-    } ],
-    "notes" : [ "Notes on the therapy..." ]
-  } ],
-  "guidelineProcedures" : [ {
-    "id" : "ff5148ce-94ab-487f-a2a4-ebc5e1ea8a53",
-    "patient" : {
-      "id" : "63f8fd7b-8127-4f3c-8843-aa9199e21c29",
-      "type" : "Patient"
-    },
-    "reason" : {
-      "id" : "744bf622-ba4b-4e64-867c-0807847d9da4",
-      "display" : "Bösartige Neubildung: Konjunktiva",
-      "type" : "MTBDiagnosis"
-    },
-    "therapyLine" : 1,
-    "intent" : {
-      "code" : "K",
-      "display" : "Kurativ",
-      "system" : "dnpm-dip/therapy/intent"
-    },
-    "code" : {
-      "code" : "surgery",
-      "display" : "OP",
-      "system" : "dnpm-dip/mtb/procedure/type"
-    },
-    "status" : {
-      "code" : "completed",
-      "display" : "Abgeschlossen",
-      "system" : "dnpm-dip/therapy/status"
-    },
-    "statusReason" : {
-      "code" : "chronic-remission",
-      "display" : "Anhaltende Remission",
-      "system" : "dnpm-dip/therapy/status-reason"
-    },
-    "recordedOn" : "2025-04-03",
-    "period" : {
-      "start" : "2024-10-03"
-    },
-    "notes" : [ "Notes on the therapeutic procedure..." ]
-  }, {
-    "id" : "461105eb-c3c6-4fd4-bcd3-799e7eaf281d",
-    "patient" : {
-      "id" : "63f8fd7b-8127-4f3c-8843-aa9199e21c29",
-      "type" : "Patient"
-    },
-    "reason" : {
-      "id" : "744bf622-ba4b-4e64-867c-0807847d9da4",
-      "display" : "Bösartige Neubildung: Konjunktiva",
-      "type" : "MTBDiagnosis"
-    },
-    "therapyLine" : 8,
-    "intent" : {
-      "code" : "K",
-      "display" : "Kurativ",
-      "system" : "dnpm-dip/therapy/intent"
-    },
-    "code" : {
-      "code" : "nuclear-medicine",
-      "display" : "Nuklearmedizinische Therapie",
-      "system" : "dnpm-dip/mtb/procedure/type"
-    },
-    "status" : {
-      "code" : "stopped",
-      "display" : "Abgebrochen",
-      "system" : "dnpm-dip/therapy/status"
-    },
-    "statusReason" : {
-      "code" : "progression",
-      "display" : "Progression",
-      "system" : "dnpm-dip/therapy/status-reason"
-    },
-    "recordedOn" : "2025-04-03",
-    "period" : {
-      "start" : "2024-10-03"
-    },
-    "notes" : [ "Notes on the therapeutic procedure..." ]
-  } ],
-  "performanceStatus" : [ {
-    "id" : "2b1522a8-9628-4e66-8769-e1f329bf37c5",
-    "patient" : {
-      "id" : "63f8fd7b-8127-4f3c-8843-aa9199e21c29",
-      "type" : "Patient"
-    },
-    "effectiveDate" : "2025-04-03",
-    "value" : {
-      "code" : "3",
-      "display" : "ECOG 3",
-      "system" : "ECOG-Performance-Status"
+        ]
+      },
+      "code": {
+        "code": "C57.0",
+        "display": "Bösartige Neubildung: Tuba uterina [Falloppio]",
+        "system": "http://fhir.de/CodeSystem/bfarm/icd-10-gm",
+        "version": "2025"
+      },
+      "topography": {
+        "code": "C57.0",
+        "display": "Eileiter",
+        "system": "urn:oid:2.16.840.1.113883.6.43.1",
+        "version": "Zweite Revision"
+      },
+      "grading": {
+        "history": [
+          {
+            "date": "2022-09-01",
+            "codes": [
+              {
+                "code": "4",
+                "display": "4 = undifferenziert",
+                "system": "https://www.basisdatensatz.de/feld/161/grading"
+              },
+              {
+                "code": "1",
+                "display": "Pilocytic astrocytoma",
+                "system": "dnpm-dip/mtb/who-grading-cns-tumors",
+                "version": "2021"
+              }
+            ]
+          }
+        ]
+      },
+      "staging": {
+        "history": [
+          {
+            "date": "2022-09-01",
+            "method": {
+              "code": "clinical",
+              "display": "Klinisch",
+              "system": "dnpm-dip/mtb/tumor-staging/method"
+            },
+            "tnmClassification": {
+              "tumor": {
+                "code": "T1",
+                "system": "UICC"
+              },
+              "nodes": {
+                "code": "N3",
+                "system": "UICC"
+              },
+              "metastasis": {
+                "code": "M0",
+                "system": "UICC"
+              }
+            },
+            "otherClassifications": [
+              {
+                "code": "local",
+                "display": "Lokal",
+                "system": "dnpm-dip/mtb/diagnosis/kds-tumor-spread"
+              }
+            ]
+          }
+        ]
+      },
+      "guidelineTreatmentStatus": {
+        "code": "no-guidelines-available",
+        "display": "Keine Leitlinien vorhanden",
+        "system": "dnpm-dip/mtb/diagnosis/guideline-treatment-status"
+      },
+      "notes": [
+        "Notes on the tumor diagnosis..."
+      ]
     }
-  } ],
-  "specimens" : [ {
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     }
-  } ]
+  ]
 }