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authorPaul-Christian Volkmer2023-12-04 17:35:44 +0100
committerPaul-Christian Volkmer2023-12-04 17:35:44 +0100
commit3e45de56cfedbb489220d789c511d07d78a0942a (patch)
tree35239c554b307457aceca79955f5dbacb1f7338b /src
parent7f54efe034326aa487a18635ff6200d4deae7fb1 (diff)
feat: add page that shows transformation configurationv0.2.0
Diffstat (limited to 'src')
-rw-r--r--src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt6
-rw-r--r--src/main/kotlin/dev/dnpm/etl/processor/web/TransformationController.kt41
-rw-r--r--src/main/resources/static/style.css23
-rw-r--r--src/main/resources/templates/fragments.html1
-rw-r--r--src/main/resources/templates/transformations.html47
5 files changed, 117 insertions, 1 deletions
diff --git a/src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt b/src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt
index 26de550..2a9dc5b 100644
--- a/src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt
+++ b/src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt
@@ -51,9 +51,13 @@ class TransformationService(private val objectMapper: ObjectMapper, private val
return objectMapper.readValue(json, MtbFile::class.java)
}
+ fun getTransformations(): List<Transformation> {
+ return this.transformations
+ }
+
}
-class Transformation private constructor(internal val path: String) {
+class Transformation private constructor(val path: String) {
lateinit var existingValue: Any
private set
diff --git a/src/main/kotlin/dev/dnpm/etl/processor/web/TransformationController.kt b/src/main/kotlin/dev/dnpm/etl/processor/web/TransformationController.kt
new file mode 100644
index 0000000..f811e9e
--- /dev/null
+++ b/src/main/kotlin/dev/dnpm/etl/processor/web/TransformationController.kt
@@ -0,0 +1,41 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program. If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.web
+
+import dev.dnpm.etl.processor.services.TransformationService
+import org.springframework.stereotype.Controller
+import org.springframework.ui.Model
+import org.springframework.web.bind.annotation.GetMapping
+import org.springframework.web.bind.annotation.RequestMapping
+
+@Controller
+@RequestMapping(path = ["transformations"])
+class TransformationController(
+ private val transformationService: TransformationService
+) {
+
+ @GetMapping
+ fun index(model: Model): String {
+ model.addAttribute("transformations", transformationService.getTransformations())
+
+ return "transformations"
+ }
+
+} \ No newline at end of file
diff --git a/src/main/resources/static/style.css b/src/main/resources/static/style.css
index 5a70c2d..203ac56 100644
--- a/src/main/resources/static/style.css
+++ b/src/main/resources/static/style.css
@@ -86,6 +86,10 @@ nav > ul > li:first-of-type {
text-decoration: none;
}
+.centered {
+ text-align: center;
+}
+
main {
margin: 0 auto;
max-width: 1140px;
@@ -209,6 +213,25 @@ td.bg-gray, th.bg-gray {
color: white;
}
+.bg-path {
+ background: var(--bg-gray-op);
+}
+
+.bg-from {
+ background: var(--bg-red-op);
+}
+
+.bg-to {
+ background: var(--bg-green-op);
+}
+
+.bg-path, .bg-from, .bg-to {
+ padding: 0.25rem 0.5rem;
+ border-radius: 3px;
+
+ font-family: monospace;
+}
+
td.bg-shaded, th.bg-shaded {
background: repeating-linear-gradient(140deg, white, #e5e5f5 4px, white 8px);
}
diff --git a/src/main/resources/templates/fragments.html b/src/main/resources/templates/fragments.html
index 369add3..ea0fe1d 100644
--- a/src/main/resources/templates/fragments.html
+++ b/src/main/resources/templates/fragments.html
@@ -10,6 +10,7 @@
<ul>
<li><a th:href="@{/}">Übersicht</a></li>
<li><a th:href="@{/statistics}">Statistiken</a></li>
+ <li><a th:href="@{/transformations}">Transformationen</a></li>
</ul>
</nav>
</div>
diff --git a/src/main/resources/templates/transformations.html b/src/main/resources/templates/transformations.html
new file mode 100644
index 0000000..b8e2f37
--- /dev/null
+++ b/src/main/resources/templates/transformations.html
@@ -0,0 +1,47 @@
+<!DOCTYPE html>
+<html lang="de" xmlns:th="http://www.thymeleaf.org">
+<head>
+ <meta charset="UTF-8">
+ <title>ETL-Prozessor</title>
+ <link rel="stylesheet" th:href="@{/style.css}" />
+</head>
+<body>
+ <div th:replace="~{fragments.html :: nav}"></div>
+ <main>
+ <h1>Transformationen</h1>
+
+ <h2>Syntax</h2>
+ Hier einige Beispiele zum Syntax des JSON-Path
+ <ul>
+ <li style="padding: 0.6rem 0;"><span class="bg-path">diagnoses[*].icdO3T.version</span>: Ersetze die ICD-O3T-Version in allen Diagnosen, z.B. zur Version der deutschen Übersetzung</li>
+ <li style="padding: 0.6rem 0;"><span class="bg-path">patient.gender</span>: Ersetze das Geschlecht des Patienten, z.B. in das von bwHC verlangte Format</li>
+ </ul>
+
+ <h2>Konfigurierte Transformationen</h2>
+ <p>
+ Hier sehen Sie eine Übersicht der konfigurierten Transformationen.
+ </p>
+
+ <table>
+ <thead>
+ <tr>
+ <th>JSON-Path</th>
+ <th>Transformation von &rArr; nach</th>
+ </tr>
+ </thead>
+ <tbody>
+ <tr th:each="transformation : ${transformations}">
+ <td>
+ <span class="bg-path" title="Ersetze Wert(e) an dieser Stelle im MTB-File">[[ ${transformation.path} ]]</span>
+ </td>
+ <td>
+ <span class="bg-from" title="Ersetze immer dann, wenn dieser Wert enthalten ist">[[ ${transformation.existingValue} ]]</span>
+ <strong>&rArr;</strong>
+ <span class="bg-to" title="Ersetze durch diesen Wert">[[ ${transformation.newValue} ]]</span>
+ </td>
+ </tr>
+ </tbody>
+ </table>
+ </main>
+</body>
+</html> \ No newline at end of file