feat!: allow missing GenomDE gICS domain name (#244)

If no domain name is given vor GenomDE consent, this will
be ignored and the consent information must be present
in incoming MTB data in order to satisfy DNPM:DIP.

4 files changed, 23 insertions, 19 deletions

diff --git a/src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java b/src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java
index fbc61a4..d445182 100644
--- a/src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java
+++ b/src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java
@@ -221,7 +221,7 @@ public class GicsConsentService extends AbstractConsentService {
     }
   }
 
-  @NonNull
+  @Nullable
   private String getConsentDomainName(ConsentDomain targetConsentDomain) {
     return switch (targetConsentDomain) {
       case BROAD_CONSENT -> gIcsConfigProperties.getBroadConsentDomainName();
diff --git a/src/main/kotlin/dev/dnpm/etl/processor/config/AppConfigProperties.kt b/src/main/kotlin/dev/dnpm/etl/processor/config/AppConfigProperties.kt
index 96e48ea..d2922f2 100644
--- a/src/main/kotlin/dev/dnpm/etl/processor/config/AppConfigProperties.kt
+++ b/src/main/kotlin/dev/dnpm/etl/processor/config/AppConfigProperties.kt
@@ -85,7 +85,7 @@ data class GIcsConfigProperties(
     /** Domain of broad consent resources */
     val broadConsentDomainName: String = "MII",
     /** Domain of Modelvorhaben 64e consent resources */
-    val genomDeConsentDomainName: String = "GenomDE_MV",
+    val genomDeConsentDomainName: String? = null,
     /** Value to expect in case of positiv consent */
     val broadConsentPolicyCode: String = "2.16.840.1.113883.3.1937.777.24.5.3.6",
     /** Consent Policy which should be used for consent check */
diff --git a/src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt b/src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt
index 6b8ae89..1880528 100644
--- a/src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt
+++ b/src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt
@@ -74,25 +74,29 @@ class ConsentProcessor(
     // fast exit - if patient has not been asked, we can skip and exit
     if (!broadConsentHasBeenAsked) return false
 
-    val genomeDeConsent =
-        consentService.getConsent(
-            personIdentifierValue,
-            requestDate,
-            ConsentDomain.MODELLVORHABEN_64E,
-        )
+    // GenomDE_MV-Consent only if domain name available else fallback to file check
+    val genomDeSequencingStatus = if (null != gIcsConfigProperties.genomDeConsentDomainName) {
+        val genomeDeConsent =
+            consentService.getConsent(
+                personIdentifierValue,
+                requestDate,
+                ConsentDomain.MODELLVORHABEN_64E,
+            )
 
-    addGenomeDbProvisions(mtbFile, genomeDeConsent)
+        addGenomeDbProvisions(mtbFile, genomeDeConsent)
 
-    if (genomeDeConsent.entry.isNotEmpty()) setGenomDeSubmissionType(mtbFile)
+        if (genomeDeConsent.entry.isNotEmpty()) setGenomDeSubmissionType(mtbFile)
+
+        getProvisionTypeByPolicyCode(genomeDeConsent, requestDate, ConsentDomain.MODELLVORHABEN_64E)
+    } else {
+        true
+    }
 
     embedBroadConsentResources(mtbFile, broadConsent)
 
     val broadConsentStatus =
         getProvisionTypeByPolicyCode(broadConsent, requestDate, ConsentDomain.BROAD_CONSENT)
 
-    val genomDeSequencingStatus =
-        getProvisionTypeByPolicyCode(genomeDeConsent, requestDate, ConsentDomain.MODELLVORHABEN_64E)
-
     if (Consent.ConsentProvisionType.NULL == broadConsentStatus) {
       // bc not asked
       return false
diff --git a/src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt
index 3e54e71..02165a6 100644
--- a/src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt
+++ b/src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt
@@ -10,11 +10,6 @@ import dev.dnpm.etl.processor.consent.GicsConsentService
 import dev.pcvolkmer.mv64e.mtb.Mtb
 import dev.pcvolkmer.mv64e.mtb.MvhSubmissionType
 import dev.pcvolkmer.mv64e.mtb.Patient
-import java.io.IOException
-import java.io.InputStream
-import java.time.Instant
-import java.time.OffsetDateTime
-import java.util.*
 import org.assertj.core.api.Assertions.assertThat
 import org.hl7.fhir.r4.model.Bundle
 import org.hl7.fhir.r4.model.CodeableConcept
@@ -33,6 +28,11 @@ import org.mockito.kotlin.doAnswer
 import org.mockito.kotlin.eq
 import org.mockito.kotlin.whenever
 import org.springframework.core.io.ClassPathResource
+import java.io.IOException
+import java.io.InputStream
+import java.time.Instant
+import java.time.OffsetDateTime
+import java.util.*
 
 @ExtendWith(MockitoExtension::class)
 class ConsentProcessorTest {
@@ -49,7 +49,7 @@ class ConsentProcessorTest {
       @Mock gicsConsentService: GicsConsentService,
   ) {
 
-    this.gIcsConfigProperties = GIcsConfigProperties("https://gics.example.com")
+    this.gIcsConfigProperties = GIcsConfigProperties(uri = "https://gics.example.com", genomDeConsentDomainName = "GenomDE_MV")
     val jacksonConfig = JacksonConfig()
     this.objectMapper = jacksonConfig.objectMapper()
     this.fhirContext = JacksonConfig.fhirContext()