diff options
Diffstat (limited to 'src/main')
| -rw-r--r-- | src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt | 25 |
1 files changed, 15 insertions, 10 deletions
diff --git a/src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt b/src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt index a95420a..20a2ba3 100644 --- a/src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt +++ b/src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt @@ -83,16 +83,6 @@ class ConsentProcessor( // 2.1 -> yes -> send mtb file // 2.2 -> no -> warn/info no consent given - /* - * broad consent - */ - val broadConsent = - consentService.getConsent(personIdentifierValue, requestDate, ConsentDomain.BROAD_CONSENT) - val broadConsentHasBeenAsked = broadConsent.entry.isNotEmpty() - - // fast exit - if patient has not been asked, we can skip and exit - if (!broadConsentHasBeenAsked) return false - // GenomDE_MV-Consent only if domain name available else fallback to file check val genomDeSequencingStatus = if (null != gIcsConfigProperties.genomDeConsentDomainName) { val genomeDeConsent = @@ -111,6 +101,21 @@ class ConsentProcessor( true } + /* + * broad consent + */ + if (null != mtbFile.metadata?.reasonResearchConsentMissing) { + // early return if there is a reason for missing broad consent + return false + } + + val broadConsent = + consentService.getConsent(personIdentifierValue, requestDate, ConsentDomain.BROAD_CONSENT) + val broadConsentHasBeenAsked = broadConsent.entry.isNotEmpty() + + // fast exit - if patient has not been asked, we can skip and exit + if (!broadConsentHasBeenAsked) return false + embedBroadConsentResources(mtbFile, broadConsent) val broadConsentStatus = |