diff options
Diffstat (limited to 'src/test')
7 files changed, 2289 insertions, 152 deletions
diff --git a/src/test/java/dev/dnpm/etl/processor/consent/GicsConsentServiceTest.java b/src/test/java/dev/dnpm/etl/processor/consent/GicsConsentServiceTest.java index c5b269d..e450e4d 100644 --- a/src/test/java/dev/dnpm/etl/processor/consent/GicsConsentServiceTest.java +++ b/src/test/java/dev/dnpm/etl/processor/consent/GicsConsentServiceTest.java @@ -1,9 +1,22 @@ package dev.dnpm.etl.processor.consent; +import static dev.dnpm.etl.processor.consent.GicsConsentService.IS_CONSENTED_ENDPOINT; +import static org.assertj.core.api.Assertions.assertThat; +import static org.springframework.test.web.client.match.MockRestRequestMatchers.requestTo; +import static org.springframework.test.web.client.response.MockRestResponseCreators.withServerError; +import static org.springframework.test.web.client.response.MockRestResponseCreators.withSuccess; + +import ca.uhn.fhir.context.FhirContext; import com.fasterxml.jackson.databind.ObjectMapper; import dev.dnpm.etl.processor.config.AppConfiguration; import dev.dnpm.etl.processor.config.AppFhirConfig; import dev.dnpm.etl.processor.config.GIcsConfigProperties; +import java.net.URI; +import java.nio.charset.StandardCharsets; +import java.time.Instant; +import java.util.Date; +import java.util.Objects; +import org.apache.commons.io.IOUtils; import org.apache.hc.core5.net.URIBuilder; import org.hl7.fhir.r4.model.*; import org.hl7.fhir.r4.model.OperationOutcome.IssueSeverity; @@ -21,168 +34,207 @@ import org.springframework.test.context.TestPropertySource; import org.springframework.test.web.client.MockRestServiceServer; import org.springframework.web.client.RestTemplate; -import java.net.URI; -import java.time.Instant; -import java.util.Date; - -import static dev.dnpm.etl.processor.consent.GicsConsentService.IS_CONSENTED_ENDPOINT; -import static org.assertj.core.api.Assertions.assertThat; -import static org.springframework.test.web.client.match.MockRestRequestMatchers.requestTo; -import static org.springframework.test.web.client.response.MockRestResponseCreators.withServerError; -import static org.springframework.test.web.client.response.MockRestResponseCreators.withSuccess; - @ContextConfiguration(classes = {AppConfiguration.class, ObjectMapper.class}) -@TestPropertySource(properties = { - "app.consent.service=gics", - "app.consent.gics.uri=http://localhost:8090/ttp-fhir/fhir/gics" -}) +@TestPropertySource( + properties = { + "app.consent.service=gics", + "app.consent.gics.uri=http://localhost:8090/ttp-fhir/fhir/gics" + }) @RestClientTest class GicsConsentServiceTest { - static final String GICS_BASE_URI = "http://localhost:8090/ttp-fhir/fhir/gics"; + static final String GICS_BASE_URI = "http://localhost:8090/ttp-fhir/fhir/gics"; - MockRestServiceServer mockRestServiceServer; - AppFhirConfig appFhirConfig; - GIcsConfigProperties gIcsConfigProperties; + MockRestServiceServer mockRestServiceServer; + AppFhirConfig appFhirConfig; + GIcsConfigProperties gIcsConfigProperties; - GicsConsentService gicsConsentService; + GicsConsentService gicsConsentService; - static URI expectedGicsConsentedEndpoint() throws Exception { + static URI expectedGicsConsentedEndpoint() throws Exception { return new URIBuilder(URI.create(GICS_BASE_URI)).appendPath(IS_CONSENTED_ENDPOINT).build(); } @BeforeEach - void setUp( - @Autowired AppFhirConfig appFhirConfig, - @Autowired GIcsConfigProperties gIcsConfigProperties - ) { - this.appFhirConfig = appFhirConfig; - this.gIcsConfigProperties = gIcsConfigProperties; + void setUp( + @Autowired AppFhirConfig appFhirConfig, + @Autowired GIcsConfigProperties gIcsConfigProperties) { + this.appFhirConfig = appFhirConfig; + this.gIcsConfigProperties = gIcsConfigProperties; - var restTemplate = new RestTemplate(); + var restTemplate = new RestTemplate(); - this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate); - this.gicsConsentService = new GicsConsentService( + this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate); + this.gicsConsentService = + new GicsConsentService( this.gIcsConfigProperties, RetryTemplate.builder().maxAttempts(1).build(), restTemplate, - this.appFhirConfig - ); - } + this.appFhirConfig); + } - @Test - void shouldReturnTtpBroadConsentStatus() throws Exception { - final Parameters consentedResponse = new Parameters() + @Test + void shouldReturnTtpBroadConsentStatus() throws Exception { + final Parameters consentedResponse = + new Parameters() .addParameter( new ParametersParameterComponent() .setName("consented") - .setValue(new BooleanType().setValue(true)) - ); - - mockRestServiceServer - .expect( - requestTo( - expectedGicsConsentedEndpoint()) - ) - .andRespond( - withSuccess( - appFhirConfig.fhirContext().newJsonParser().encodeResourceToString(consentedResponse), - MediaType.APPLICATION_JSON - ) - ); - - var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456"); - assertThat(consentStatus).isEqualTo(TtpConsentStatus.BROAD_CONSENT_GIVEN); - } - - @Test - void shouldReturnRevokedConsent() throws Exception { - final Parameters revokedResponse = new Parameters() + .setValue(new BooleanType().setValue(true))); + + mockRestServiceServer + .expect(requestTo(expectedGicsConsentedEndpoint())) + .andRespond( + withSuccess( + appFhirConfig + .fhirContext() + .newJsonParser() + .encodeResourceToString(consentedResponse), + MediaType.APPLICATION_JSON)); + + var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456"); + assertThat(consentStatus).isEqualTo(TtpConsentStatus.BROAD_CONSENT_GIVEN); + } + + @Test + void shouldReturnRevokedConsent() throws Exception { + final Parameters revokedResponse = + new Parameters() .addParameter( new ParametersParameterComponent() .setName("consented") - .setValue(new BooleanType().setValue(false)) - ); - - mockRestServiceServer - .expect( - requestTo( - expectedGicsConsentedEndpoint()) - ) - .andRespond( - withSuccess( - appFhirConfig.fhirContext().newJsonParser().encodeResourceToString(revokedResponse), - MediaType.APPLICATION_JSON) - ); - - var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456"); - assertThat(consentStatus).isEqualTo(TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED); - } - - - @Test - void shouldReturnInvalidParameterResponse() throws Exception { - final OperationOutcome responseWithErrorOutcome = new OperationOutcome() + .setValue(new BooleanType().setValue(false))); + + mockRestServiceServer + .expect(requestTo(expectedGicsConsentedEndpoint())) + .andRespond( + withSuccess( + appFhirConfig.fhirContext().newJsonParser().encodeResourceToString(revokedResponse), + MediaType.APPLICATION_JSON)); + + var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456"); + assertThat(consentStatus).isEqualTo(TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED); + } + + @Test + void shouldReturnInvalidParameterResponse() throws Exception { + final OperationOutcome responseWithErrorOutcome = + new OperationOutcome() .addIssue( new OperationOutcomeIssueComponent() .setSeverity(IssueSeverity.ERROR) .setCode(IssueType.PROCESSING) - .setDiagnostics("Invalid policy parameter...") - ); - - mockRestServiceServer - .expect( - requestTo(expectedGicsConsentedEndpoint()) - ) - .andRespond( - withSuccess( - appFhirConfig.fhirContext().newJsonParser().encodeResourceToString(responseWithErrorOutcome), - MediaType.APPLICATION_JSON - ) - ); - - var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456"); - assertThat(consentStatus).isEqualTo(TtpConsentStatus.FAILED_TO_ASK); - } - - @Test - void shouldReturnRequestError() throws Exception { - mockRestServiceServer - .expect( - requestTo(expectedGicsConsentedEndpoint()) - ) - .andRespond( - withServerError() - ); - - var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456"); - assertThat(consentStatus).isEqualTo(TtpConsentStatus.FAILED_TO_ASK); - } - - @Test - void buildRequestParameterCurrentPolicyStatesForPersonTest() { - String pid = "12345678"; - var result = gicsConsentService - .buildRequestParameterCurrentPolicyStatesForPerson( - pid, - Date.from(Instant.now()), - ConsentDomain.MODELLVORHABEN_64E - ); - - assertThat(result.getParameter()) - .as("should contain 3 parameter resources") - .hasSize(3); - - assertThat(((StringType) result.getParameter("domain").getValue()).getValue()) - .isEqualTo( - gIcsConfigProperties.getGenomDeConsentDomainName() - ); - - assertThat(((Identifier) result.getParameter("personIdentifier").getValue()).getValue()) - .isEqualTo( - pid - ); - } + .setDiagnostics("Invalid policy parameter...")); + + mockRestServiceServer + .expect(requestTo(expectedGicsConsentedEndpoint())) + .andRespond( + withSuccess( + appFhirConfig + .fhirContext() + .newJsonParser() + .encodeResourceToString(responseWithErrorOutcome), + MediaType.APPLICATION_JSON)); + + var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456"); + assertThat(consentStatus).isEqualTo(TtpConsentStatus.FAILED_TO_ASK); + } + + @Test + void shouldReturnRequestError() throws Exception { + mockRestServiceServer + .expect(requestTo(expectedGicsConsentedEndpoint())) + .andRespond(withServerError()); + + var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456"); + assertThat(consentStatus).isEqualTo(TtpConsentStatus.FAILED_TO_ASK); + } + + @Test + void buildRequestParameterCurrentPolicyStatesForPersonTest() { + String pid = "12345678"; + var result = + gicsConsentService.buildRequestParameterCurrentPolicyStatesForPerson( + pid, Date.from(Instant.now()), ConsentDomain.MODELLVORHABEN_64E); + + assertThat(result.getParameter()).as("should contain 3 parameter resources").hasSize(3); + assertThat(((StringType) result.getParameter("domain").getValue()).getValue()) + .isEqualTo(gIcsConfigProperties.getGenomDeConsentDomainName()); + assertThat(((Identifier) result.getParameter("personIdentifier").getValue()).getValue()) + .isEqualTo(pid); + } + + @Test + void convertGicsResultToMiiBroadConsent() throws Exception { + var fhirJsonParser = FhirContext.forR4().newJsonParser(); + fhirJsonParser.setPrettyPrint(true); + + var gicsInputStream = + Objects.requireNonNull( + this.getClass() + .getClassLoader() + .getResourceAsStream("fake_broadConsent_gics_response_permit.json")); + var gicsConsentBundle = + (Bundle) + fhirJsonParser.parseResource(IOUtils.toString(gicsInputStream, StandardCharsets.UTF_8)); + + var miiInputStream = + Objects.requireNonNull( + this.getClass() + .getClassLoader() + .getResourceAsStream("fake_broadConsent_mii_response_permit.json")); + var miiConsent = IOUtils.toString(miiInputStream, StandardCharsets.UTF_8); + + var actual = gicsConsentService.convertGicsResultToMiiBroadConsent(gicsConsentBundle); + + assertThat(fhirJsonParser.encodeToString(actual)).isEqualTo(miiConsent); + } + + @Test + void convertedMiiBroadConsentShouldNotContainPatientId() throws Exception { + var fhirJsonParser = FhirContext.forR4().newJsonParser(); + fhirJsonParser.setPrettyPrint(true); + + var miiInputStream = + Objects.requireNonNull( + this.getClass() + .getClassLoader() + .getResourceAsStream("fake_broadConsent_mii_response_permit.json")); + var miiConsentBundle = + (Bundle) + fhirJsonParser.parseResource(IOUtils.toString(miiInputStream, StandardCharsets.UTF_8)); + + var currentPatientId = miiConsentBundle.getEntry().getFirst().getResource().getIdPart(); + + var actual = gicsConsentService.anonymizeBroadConsent(miiConsentBundle); + assertThat(fhirJsonParser.encodeToString(actual)).doesNotContain(currentPatientId); + } + + @Test + void miiBroadConsentShouldNotBeConvertedAgain() throws Exception { + var fhirJsonParser = FhirContext.forR4().newJsonParser(); + fhirJsonParser.setPrettyPrint(true); + + var gicsInputStream = + Objects.requireNonNull( + this.getClass() + .getClassLoader() + .getResourceAsStream("fake_broadConsent_mii_response_permit.json")); + var gicsConsentBundle = + (Bundle) + fhirJsonParser.parseResource(IOUtils.toString(gicsInputStream, StandardCharsets.UTF_8)); + + var miiInputStream = + Objects.requireNonNull( + this.getClass() + .getClassLoader() + .getResourceAsStream("fake_broadConsent_mii_response_permit.json")); + var miiConsent = IOUtils.toString(miiInputStream, StandardCharsets.UTF_8); + + var actual = gicsConsentService.convertGicsResultToMiiBroadConsent(gicsConsentBundle); + + assertThat(fhirJsonParser.encodeToString(actual)).isEqualTo(miiConsent); + } } diff --git a/src/test/kotlin/dev/dnpm/etl/processor/consent/ConsentProcessorTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/consent/ConsentProcessorTest.kt new file mode 100644 index 0000000..5a86a29 --- /dev/null +++ b/src/test/kotlin/dev/dnpm/etl/processor/consent/ConsentProcessorTest.kt @@ -0,0 +1,58 @@ +package dev.dnpm.etl.processor.consent + +import ca.uhn.fhir.context.FhirContext +import com.fasterxml.jackson.databind.ObjectMapper +import dev.dnpm.etl.processor.config.AppConfigProperties +import dev.dnpm.etl.processor.config.GIcsConfigProperties +import dev.dnpm.etl.processor.services.ConsentProcessor +import org.assertj.core.api.Assertions.assertThat +import org.hl7.fhir.r4.model.Bundle +import org.hl7.fhir.r4.model.Consent +import org.junit.jupiter.api.BeforeEach +import org.junit.jupiter.api.extension.ExtendWith +import org.junit.jupiter.params.ParameterizedTest +import org.junit.jupiter.params.provider.CsvSource +import org.mockito.Mock +import org.mockito.junit.jupiter.MockitoExtension +import java.util.* + +@ExtendWith(MockitoExtension::class) +class ConsentProcessorTest { + + lateinit var consentProcessor: ConsentProcessor + + val objectMapper = ObjectMapper() + val fhirContext = FhirContext.forR4() + + @BeforeEach + fun setup( + @Mock consentService: IConsentService + ) { + val appConfigProperties = AppConfigProperties() + val gIcsConfigProperties = GIcsConfigProperties("http://localhost") + + this.consentProcessor = ConsentProcessor( + appConfigProperties, + gIcsConfigProperties, + objectMapper, + fhirContext, + consentService + ) + } + + @ParameterizedTest + @CsvSource(value = [ + "permittedConsentBundle.json,permit", + "deniedConsentBundle.json,deny" + ]) + fun checkGetProvisionTypeByPolicyCode(filename: String, expected: String) { + val bundle = fhirContext.newJsonParser().parseResource( + this.javaClass.classLoader.getResourceAsStream(filename) + ) + assertThat(bundle).isInstanceOf(Bundle::class.java) + + val actual = consentProcessor.getProvisionTypeByPolicyCode(bundle as Bundle, Date(), ConsentDomain.BROAD_CONSENT) + + assertThat(actual).isEqualTo(Consent.ConsentProvisionType.valueOf(expected.uppercase())) + } +}
\ No newline at end of file diff --git a/src/test/kotlin/dev/dnpm/etl/processor/monitoring/ConnectionCheckServiceTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/monitoring/ConnectionCheckServiceTest.kt index 7205714..a6d855c 100644 --- a/src/test/kotlin/dev/dnpm/etl/processor/monitoring/ConnectionCheckServiceTest.kt +++ b/src/test/kotlin/dev/dnpm/etl/processor/monitoring/ConnectionCheckServiceTest.kt @@ -3,20 +3,22 @@ package dev.dnpm.etl.processor.monitoring import dev.dnpm.etl.processor.config.GIcsConfigProperties import dev.dnpm.etl.processor.config.GPasConfigProperties import dev.dnpm.etl.processor.config.RestTargetProperties +import org.assertj.core.api.Assertions.assertThat import org.junit.jupiter.api.BeforeEach import org.junit.jupiter.api.Nested import org.junit.jupiter.api.Test import org.junit.jupiter.api.extension.ExtendWith -import org.mockito.Mock import org.mockito.junit.jupiter.MockitoExtension import org.springframework.http.HttpMethod import org.springframework.http.MediaType import org.springframework.test.web.client.MockRestServiceServer import org.springframework.test.web.client.match.MockRestRequestMatchers.method import org.springframework.test.web.client.match.MockRestRequestMatchers.requestTo +import org.springframework.test.web.client.response.MockRestResponseCreators.withServerError import org.springframework.test.web.client.response.MockRestResponseCreators.withSuccess import org.springframework.web.client.RestTemplate import reactor.core.publisher.Sinks +import reactor.test.StepVerifier @ExtendWith(MockitoExtension::class) class ConnectionCheckServiceTest { @@ -26,19 +28,18 @@ class ConnectionCheckServiceTest { lateinit var mockRestServiceServer: MockRestServiceServer lateinit var service: RestConnectionCheckService + lateinit var sink: Sinks.Many<ConnectionCheckResult> @BeforeEach - fun setUp( - @Mock sink: Sinks.Many<ConnectionCheckResult> - ) { + fun setUp() { val restTemplate = RestTemplate() - this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate) - val restTargetProperties = RestTargetProperties( "http://localhost/api", "user", "password", ) + this.sink = Sinks.many().multicast().onBackpressureBuffer() + this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate) this.service = RestConnectionCheckService(restTemplate, restTargetProperties, sink) } @@ -53,9 +54,51 @@ class ConnectionCheckServiceTest { ) this.service.check() - this.mockRestServiceServer.verify() + } + + @Test + fun shouldEmitAvailable() { + this.mockRestServiceServer + .expect(method(HttpMethod.GET)) + .andRespond( + withSuccess("OK", MediaType.APPLICATION_JSON), + ) + + val verifier = StepVerifier.create(sink.asFlux()) + .assertNext { + assertThat(it.available).isTrue() + } + .expectComplete() + .verifyLater() + + this.service.check() + + this.sink.emitComplete(Sinks.EmitFailureHandler.FAIL_FAST) + + verifier.verify() + } + + @Test + fun shouldEmitUnavailable() { + this.mockRestServiceServer + .expect(method(HttpMethod.GET)) + .andRespond( + withServerError() + ) + + val verifier = StepVerifier.create(sink.asFlux()) + .assertNext { + assertThat(it.available).isFalse() + } + .expectComplete() + .verifyLater() + + this.service.check() + this.sink.emitComplete(Sinks.EmitFailureHandler.FAIL_FAST) + + verifier.verify() } } @@ -64,22 +107,22 @@ class ConnectionCheckServiceTest { lateinit var mockRestServiceServer: MockRestServiceServer lateinit var service: GPasConnectionCheckService + lateinit var sink: Sinks.Many<ConnectionCheckResult> @BeforeEach - fun setUp( - @Mock sink: Sinks.Many<ConnectionCheckResult> - ) { + fun setUp() { val restTemplate = RestTemplate() - this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate) - val gpasTargetProperties = GPasConfigProperties( "http://localhost/gpas", null, + null, "patientDomain", "genomDeTanDomain", "username", "password", ) + this.sink = Sinks.many().multicast().onBackpressureBuffer() + this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate) this.service = GPasConnectionCheckService(restTemplate, gpasTargetProperties, sink) } @@ -96,7 +139,50 @@ class ConnectionCheckServiceTest { this.service.check() this.mockRestServiceServer.verify() + } + + @Test + fun shouldEmitAvailable() { + this.mockRestServiceServer + .expect(method(HttpMethod.GET)) + .andRespond( + withSuccess("OK", MediaType.APPLICATION_JSON), + ) + val verifier = StepVerifier.create(sink.asFlux()) + .assertNext { + assertThat(it.available).isTrue() + } + .expectComplete() + .verifyLater() + + this.service.check() + + this.sink.emitComplete(Sinks.EmitFailureHandler.FAIL_FAST) + + verifier.verify() + } + + @Test + fun shouldEmitUnavailable() { + this.mockRestServiceServer + .expect(method(HttpMethod.GET)) + .andRespond( + withServerError() + ) + + val verifier = StepVerifier.create(sink.asFlux()) + .assertNext { + assertThat(it.available).isFalse() + } + .expectComplete() + .verifyLater() + + this.service.check() + + this.sink.emitComplete(Sinks.EmitFailureHandler.FAIL_FAST) + + verifier.verify() } } @@ -105,19 +191,19 @@ class ConnectionCheckServiceTest { lateinit var mockRestServiceServer: MockRestServiceServer lateinit var service: GIcsConnectionCheckService + lateinit var sink: Sinks.Many<ConnectionCheckResult> @BeforeEach - fun setUp( - @Mock sink: Sinks.Many<ConnectionCheckResult> - ) { + fun setUp() { val restTemplate = RestTemplate() - this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate) val gicsTargetProperties = GIcsConfigProperties( "http://localhost/gics", "username", "password", ) + this.sink = Sinks.many().multicast().onBackpressureBuffer() + this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate) this.service = GIcsConnectionCheckService(restTemplate, gicsTargetProperties, sink) } @@ -136,6 +222,50 @@ class ConnectionCheckServiceTest { this.mockRestServiceServer.verify() } + + @Test + fun shouldEmitAvailable() { + this.mockRestServiceServer + .expect(method(HttpMethod.GET)) + .andRespond( + withSuccess("OK", MediaType.APPLICATION_JSON), + ) + + val verifier = StepVerifier.create(sink.asFlux()) + .assertNext { + assertThat(it.available).isTrue() + } + .expectComplete() + .verifyLater() + + this.service.check() + + this.sink.emitComplete(Sinks.EmitFailureHandler.FAIL_FAST) + + verifier.verify() + } + + @Test + fun shouldEmitUnavailable() { + this.mockRestServiceServer + .expect(method(HttpMethod.GET)) + .andRespond( + withServerError() + ) + + val verifier = StepVerifier.create(sink.asFlux()) + .assertNext { + assertThat(it.available).isFalse() + } + .expectComplete() + .verifyLater() + + this.service.check() + + this.sink.emitComplete(Sinks.EmitFailureHandler.FAIL_FAST) + + verifier.verify() + } } }
\ No newline at end of file diff --git a/src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt index 4d414c5..bbc8b1a 100644 --- a/src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt +++ b/src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt @@ -80,7 +80,7 @@ class ConsentProcessorTest { val checkResult = consentProcessor.consentGatedCheckAndTryEmbedding(inputMtb) assertThat(checkResult).isTrue - assertThat(inputMtb.metadata.researchConsents).hasSize(26) + assertThat(inputMtb.metadata.researchConsents).isNotEmpty } companion object { diff --git a/src/test/resources/deniedConsentBundle.json b/src/test/resources/deniedConsentBundle.json new file mode 100644 index 0000000..3487c57 --- /dev/null +++ b/src/test/resources/deniedConsentBundle.json @@ -0,0 +1,692 @@ +{ + "resourceType": "Bundle", + "type": "collection", + "entry": [ + { + "fullUrl": "http://gics:8080/ttp-fhir/fhir/gics/Consent/XXXX", + "resource": { + "resourceType": "Consent", + "id": "XXXX", + "meta": { + "lastUpdated": "2025-10-31T14:21:04.630+01:00", + "profile": [ + "http://fhir.de/ConsentManagement/StructureDefinition/Consent", + "https://www.medizininformatik-initiative.de/fhir/modul-consent/StructureDefinition/mii-pr-consent-einwilligung" + ] + }, + "extension": [ + { + "url": "http://fhir.de/ConsentManagement/StructureDefinition/DomainReference", + "extension": [ + { + "url": "domain", + "valueReference": { + "reference": "ResearchStudy/VVVVV" + } + }, + { + "url": "status", + "valueCoding": { + "system": "http://hl7.org/fhir/publication-status", + "code": "active" + } + } + ] + } + ], + "status": "active", + "scope": { + "coding": [ + { + "system": "http://terminology.hl7.org/CodeSystem/consentscope", + "code": "research" + } + ] + }, + "category": [ + { + "coding": [ + { + "system": "http://loinc.org", + "code": "57016-8" + } + ] + }, + { + "coding": [ + { + "system": "https://www.medizininformatik-initiative.de/fhir/modul-consent/CodeSystem/mii-cs-consent-consent_category", + "code": "2.16.840.1.113883.3.1937.777.24.2.184" + } + ] + } + ], + "patient": { + "reference": "Patient/psn-pat-here", + "display": "Patienten-ID PID-HERE" + }, + "dateTime": "2025-10-13T00:00:00+01:00", + "organization": [ + { + "display": "MII" + } + ], + "sourceReference": { + "reference": "QuestionnaireResponse/XXXX" + }, + "policy": [ + { + "uri": "urn:oid:2.16.840.1.113883.3.1937.777.24.2.1791" + } + ], + "provision": { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "provision": [ + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "IDAT_erheben", + "display": "Erfassung neuer identifizierender Daten (IDAT)" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.2", + "display": "IDAT erheben" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "KKDAT_5J_retro_speichern_verarbeiten", + "display": "Retrospektive Krankenkassendaten (KKDAT) aus fünf Jahren vor Einwilligung speichern und codiert verarbeiten zu Zwecken med. Forschung in der verantwortlichen Stelle" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.12", + "display": "KKDAT 5J retrospektiv speichern verarbeiten" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "BIOMAT_wissenschaftlich_nutzen_EU_DSGVO_konform", + "display": "Bereitstellung umcodierter Biomaterialien (BIOMAT) für wissenschaftliche Nutzung und Analysen zu Zwecken med. Forschung an ext. Forscher" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.22", + "display": "BIOMAT wissenschaftlich nutzen EU DSGVO NIVEAU" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "KKDAT_5J_retro_wissenschaftlich_nutzen", + "display": "Bereitstellung umcodierter retrospektiver Krankenkassendaten (KKDAT) für wissenschaftliche Nutzung zu Zwecken med. Forschung an externe Forscher" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.13", + "display": "KKDAT 5J retrospektiv wissenschaftlich nutzen" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "BIOMAT_Analysedaten_zusammenfuehren_Dritte", + "display": "Zusammenführen von auf Biomaterialien (BIOMAT) basierenden Analysedaten mit Analysedaten Dritter, sofern dort ebenfalls eine Einwilligung vorliegt" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.23", + "display": "BIOMAT Analysedaten zusammenfuehren Dritte" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "Rekontaktierung_Zusatzbefund", + "display": "Rekontaktierung bezüglich Zusatzbefund im Rahmen der am Standort dafür entwickelten Prozesse und der im Nutzungsantrag angegebenen Bedingungen" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.31", + "display": "Rekontaktierung Zusatzbefund" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "KKDAT_5J_pro_wissenschaftlich_nutzen", + "display": "Bereitstellung umcodierter prospektiver Krankenkassendaten (KKDAT) aus fünf Jahren ab Einwilligung zu Zwecken med. Forschung an ext. Forscher" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.17", + "display": "KKDAT 5J prospektiv wissenschaftlich nutzen" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "BIOMAT_lagern_verarbeiten", + "display": "Lagerung und Verarbeitung von Biomaterialien innerhalb der verantwortlichen Stelle (BIOMAT)" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.20", + "display": "BIOMAT lagern verarbeiten" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "KKDAT_5J_retro_uebertragen", + "display": "Krankenkassendaten (KKDAT) der letzten fünf Kalenderjahre vor Datum Unterschrift übertragen" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.11", + "display": "KKDAT 5J retrospektiv uebertragen" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "KKDAT_KVNR_5J_retro_uebertragen", + "display": "Erlaubnis zur retrospektiven Übermittlung der KVNr., MII-Pseudonym und Zeitraum Datenübermittlung (von:5 Jahre vor Datum Unterschrift; bis: Datum Unterschrift) an zuständige Stelle" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.38", + "display": "KKDAT 5J retrospektiv uebertragen KVNR" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2030-03-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "MDAT_erheben", + "display": "Erfassung medizinischer Daten (MDAT)" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.6", + "display": "MDAT erheben" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "KKDAT_5J_pro_speichern_verarbeiten", + "display": "Prospektive Krankenkassendaten (KKDAT) aus fünf Jahren ab Einwilligung speichern und codiert verarbeiten zu Zwecken der med. Forschung in der verantwortlichen Stelle" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.16", + "display": "KKDAT 5J prospektiv speichern verarbeiten" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "MDAT_wissenschaftlich_nutzen_EU_DSGVO_konform", + "display": "Bereitstellung umcodierter medizinischer Daten (MDAT) für wissenschaftliche Nutzung zu Zwecken med. Forschung an externe Forscher" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.8", + "display": "MDAT wissenschaftlich nutzen EU DSGVO NIVEAU" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "Rekontaktierung_Verknuepfung_Datenbanken", + "display": "Rekontaktierung zur Verknüpfung von Patientendaten mit Daten anderer Datenbanken" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.27", + "display": "Rekontaktierung Verknüpfung Datenbanken" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "Rekontaktierung_weitere_Studien", + "display": "Rekontaktierung bezüglich Information zu neuen Forschungsvorhaben oder Studien" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.29", + "display": "Rekontaktierung weitere Studien" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "IDAT_bereitstellen_EU_DSGVO_konform", + "display": "Herausgabe identifizierender Daten (IDAT) an unabhängige Treuhandstelle zur weiteren Verarbeitung" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.5", + "display": "IDAT bereitstellen EU DSGVO NIVEAU" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "IDAT_speichern_verarbeiten", + "display": "Speicherung und Verarbeitung identifizierender Daten (IDAT) zu Zwecken med. Forschung in der verantwortlichen Stelle" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.3", + "display": "IDAT speichern, verarbeiten" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "MDAT_speichern_verarbeiten", + "display": "Speicherung und Verarbeitung von medizinischen codierten Daten zu Zwecken med. Forschung innerhalb der verantwortlichen Stelle (MDAT)" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.7", + "display": "MDAT speichern, verarbeiten" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2030-03-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "BIOMAT_erheben", + "display": "Gewinnung von Biomaterialien (BIOMAT)" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.19", + "display": "BIOMAT erheben" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "Rekontaktierung_Ergebnisse_erheblicher_Bedeutung", + "display": "Rekontaktierung des Betroffenen bei Ergebnissen von erheblicher Bedeutung" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.37", + "display": "Rekontaktierung Ergebnisse erheblicher Bedeutung" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2030-03-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "KKDAT_KVNR_5J_pro_uebertragen", + "display": "Erlaubnis zur prospektiven Übermittlung der KVNr., MII-Pseudonym und Zeitraum Datenübermittlung (von: Datum Unterschrift; bis: max. 5 Kalenderjahre nach Unterschrift) an zuständige Stelle" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.39", + "display": "KKDAT 5J prospektiv uebertragen KVNR" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2030-03-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "BIOMAT_Zusatzmengen_entnehmen", + "display": "Entnahme zusätzlicher Mengen von Biomaterialien (BIOMAT) in den in der Einwilligung beschriebenen Grenzen" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.25", + "display": "BIOMAT Zusatzmengen entnehmen" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "Rekontaktierung_weitere_Erhebung", + "display": "Rekontaktierung bezüglich Erhebung zusätzlicher Daten" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.28", + "display": "Rekontaktierung weitere Erhebung" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "IDAT_zusammenfuehren_Dritte", + "display": "Zusammenführung identifizierender Daten (IDAT) über die unabhängige Treuhandstelle mit Dritten Forschungspartnern, sofern dort eine Einwilligung vorliegt" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.4", + "display": "IDAT zusammenfuehren Dritte" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2055-10-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy", + "code": "MDAT_zusammenfuehren_Dritte", + "display": "Zusammenführung medizinischer Daten (MDAT) mit Dritten Forschungspartnern, sofern dort eine Einwilligung vorliegt" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.9", + "display": "MDAT zusammenfuehren Dritte" + } + ] + } + ] + }, + { + "type": "deny", + "period": { + "start": "2025-10-13T00:00:00+01:00", + "end": "2030-03-13T00:00:00+01:00" + }, + "code": [ + { + "coding": [ + { + "system": "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/MII", + "code": "KKDAT_5J_pro_uebertragen", + "display": "Prospektive Krankenkassendaten (KKDAT) für fünf Kalenderjahre nach Datum Unterschrift übertragen" + }, + { + "system": "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3", + "code": "2.16.840.1.113883.3.1937.777.24.5.3.15", + "display": "KKDAT 5J prospektiv uebertragen" + } + ] + } + ] + } + ] + } + } + } + ] +} diff --git a/src/test/resources/fake_broadConsent_mii_response_permit.json b/src/test/resources/fake_broadConsent_mii_response_permit.json new file mode 100644 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