diff options
Diffstat (limited to 'src')
| -rw-r--r-- | src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt | 102 |
1 files changed, 52 insertions, 50 deletions
diff --git a/src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt b/src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt index 7951b21..b0221bc 100644 --- a/src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt +++ b/src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt @@ -74,150 +74,152 @@ infix fun MtbFile.anonymizeContentWith(pseudonymizeService: PseudonymizeService) } this.episode?.apply { - id?.apply { anonymize(this) } + id = id?.let { + anonymize(it) + } } this.carePlans?.onEach { carePlan -> carePlan?.apply { - id?.apply { anonymize(this) } - diagnosis?.apply { anonymize(this) } - geneticCounsellingRequest?.apply { anonymize(this) } - rebiopsyRequests = rebiopsyRequests.map { it?.apply { anonymize(this) } } - recommendations = recommendations.map { it?.apply { anonymize(this) } } - studyInclusionRequests = studyInclusionRequests.map { it?.apply { anonymize(this) } } + id = id?.let { anonymize(it) } + diagnosis = diagnosis?.let { anonymize(it) } + geneticCounsellingRequest = geneticCounsellingRequest?.let { anonymize(it) } + rebiopsyRequests = rebiopsyRequests.map { it?.let { anonymize(it) } } + recommendations = recommendations.map { it?.let { anonymize(it) } } + studyInclusionRequests = studyInclusionRequests.map { it?.let { anonymize(it) } } } } this.claims?.onEach { claim -> claim?.apply { - id?.apply { anonymize(this) } - therapy?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + therapy = therapy?.let { anonymize(it) } } } this.claimResponses?.onEach { claimResponse -> claimResponse?.apply { - id?.apply { anonymize(this) } - claim?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + claim = claim?.let { anonymize(it) } } } this.consent?.apply { - id?.apply { anonymize(this) } + id = id?.let { anonymize(it) } } this.diagnoses?.onEach { diagnosis -> diagnosis?.apply { - id?.apply { anonymize(this) } - histologyResults = histologyResults?.map { it?.apply { anonymize(this) } } + id = id?.let { anonymize(it) } + histologyResults = histologyResults?.map { it?.let { anonymize(it) } } } } this.ecogStatus?.onEach { ecogStatus -> ecogStatus?.apply { - id?.apply { anonymize(this) } + id = id?.let { anonymize(it) } } } this.familyMemberDiagnoses?.onEach { familyMemberDiagnosis -> familyMemberDiagnosis?.apply { - id?.apply { anonymize(this) } + id = id?.let { anonymize(it) } } } this.geneticCounsellingRequests?.onEach { geneticCounsellingRequest -> geneticCounsellingRequest?.apply { - id?.apply { anonymize(this) } + id = id?.let { anonymize(it) } } } this.histologyReevaluationRequests?.onEach { histologyReevaluationRequest -> histologyReevaluationRequest?.apply { - id?.apply { anonymize(this) } - specimen?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + specimen = specimen?.let { anonymize(it) } } } this.histologyReports?.onEach { histologyReport -> histologyReport?.apply { - id?.apply { anonymize(this) } - specimen?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + specimen = specimen?.let { anonymize(it) } tumorMorphology?.apply { - id?.apply { anonymize(this) } - specimen?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + specimen = specimen?.let { anonymize(it) } } tumorCellContent?.apply { - id?.apply { anonymize(this) } - specimen?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + specimen = specimen?.let { anonymize(it) } } } } this.lastGuidelineTherapies?.onEach { lastGuidelineTherapy -> lastGuidelineTherapy?.apply { - id?.apply { anonymize(this) } - diagnosis?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + diagnosis = diagnosis?.let { anonymize(it) } } } this.molecularPathologyFindings?.onEach { molecularPathologyFinding -> molecularPathologyFinding?.apply { - id?.apply { anonymize(this) } - specimen?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + specimen = specimen?.let { anonymize(it) } } } this.molecularTherapies?.onEach { molecularTherapy -> molecularTherapy?.apply { history?.onEach { history -> history?.apply { - id?.apply { anonymize(this) } - basedOn?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + basedOn = basedOn?.let { anonymize(it) } } } } } this.ngsReports?.onEach { ngsReport -> ngsReport?.apply { - id?.apply { anonymize(this) } - specimen?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + specimen = specimen?.let { anonymize(it) } tumorCellContent?.apply { - id?.apply { anonymize(this) } - specimen?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + specimen = specimen?.let { anonymize(it) } } simpleVariants?.onEach { simpleVariant -> simpleVariant?.apply { - id?.apply { anonymize(this) } + id = id?.let { anonymize(it) } } } } } this.previousGuidelineTherapies?.onEach { previousGuidelineTherapy -> previousGuidelineTherapy?.apply { - id?.apply { anonymize(this) } - diagnosis?.apply { anonymize(this) } - this.medication.forEach { medication -> + id = id?.let { anonymize(it) } + diagnosis = diagnosis?.let { anonymize(it) } + medication.forEach { medication -> medication?.apply { - id?.apply { anonymize(this) } + id = id?.let { anonymize(it) } } } } } this.rebiopsyRequests?.onEach { rebiopsyRequest -> rebiopsyRequest?.apply { - id?.apply { anonymize(this) } - specimen?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + specimen = specimen?.let { anonymize(it) } } } this.recommendations?.onEach { recommendation -> recommendation?.apply { - id?.apply { anonymize(this) } - diagnosis?.apply { anonymize(this) } - ngsReport?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + diagnosis = diagnosis?.let { anonymize(it) } + ngsReport = ngsReport?.let { anonymize(it) } } } this.responses?.onEach { response -> response?.apply { - id?.apply { anonymize(this) } - therapy?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + therapy = therapy?.let { anonymize(it) } } } this.studyInclusionRequests?.onEach { studyInclusionRequest -> studyInclusionRequest?.apply { - id?.apply { anonymize(this) } - reason?.apply { anonymize(this) } + id = id?.let { anonymize(it) } + reason = reason?.let { anonymize(it) } } } this.specimens?.onEach { specimen -> specimen?.apply { - id?.apply { anonymize(this) } + id = id?.let { anonymize(it) } } } }
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