/* * This file is part of ETL-Processor * * Copyright (c) 2023 Comprehensive Cancer Center Mainfranken * Copyright (c) 2023-2026 Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as published * by the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see . */ package dev.dnpm.etl.processor import dev.dnpm.etl.processor.monitoring.RequestRepository import dev.dnpm.etl.processor.monitoring.RequestStatus import dev.dnpm.etl.processor.output.DnpmV2MtbFileRequest import dev.dnpm.etl.processor.output.MtbFileSender import dev.pcvolkmer.mv64e.mtb.* import org.assertj.core.api.Assertions.assertThat import org.junit.jupiter.api.BeforeEach import org.junit.jupiter.api.Nested import org.junit.jupiter.api.Test import org.junit.jupiter.api.extension.ExtendWith import org.mockito.kotlin.* import org.springframework.beans.factory.annotation.Autowired import org.springframework.boot.webmvc.test.autoconfigure.AutoConfigureMockMvc import org.springframework.boot.test.context.SpringBootTest import org.springframework.context.ApplicationContext import org.springframework.http.MediaType import org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.user import org.springframework.test.context.TestPropertySource import org.springframework.test.context.bean.override.mockito.MockitoBean import org.springframework.test.context.junit.jupiter.SpringExtension import org.springframework.test.web.servlet.MockMvc import org.springframework.test.web.servlet.post import org.testcontainers.junit.jupiter.Testcontainers import tools.jackson.databind.json.JsonMapper @Testcontainers @ExtendWith(SpringExtension::class) @SpringBootTest @MockitoBean(types = [MtbFileSender::class]) @TestPropertySource( properties = [ "app.rest.uri=http://example.com", "app.pseudonymize.generator=buildin", "app.consent.service=none", ] ) class EtlProcessorApplicationTests : AbstractTestcontainerTest() { @Test fun contextLoadsIfMtbFileSenderConfigured(@Autowired context: ApplicationContext) { // Simply check bean configuration assertThat(context).isNotNull } @Nested @SpringBootTest(webEnvironment = SpringBootTest.WebEnvironment.MOCK) @AutoConfigureMockMvc @TestPropertySource( properties = [ "app.security.admin-user=admin", "app.security.admin-password={noop}very-secret", "app.pseudonymize.generator=buildin", "app.consent.service=none", "app.transformations[0].path=diagnoses[*].code.version", "app.transformations[0].from=2013", "app.transformations[0].to=2014", ] ) inner class TransformationTest { @MockitoBean private lateinit var mtbFileSender: MtbFileSender private lateinit var mockMvc: MockMvc private lateinit var jsonMapper: JsonMapper @BeforeEach fun setup( @Autowired mockMvc: MockMvc, @Autowired jsonMapper: JsonMapper, @Autowired requestRepository: RequestRepository ) { this.mockMvc = mockMvc this.jsonMapper = jsonMapper requestRepository.deleteAll() } @Test fun mtbFileIsTransformed() { doAnswer { MtbFileSender.Response(RequestStatus.SUCCESS) } .whenever(mtbFileSender) .send(any()) val mtbFile = Mtb.builder() .patient(Patient.builder().id("TEST_12345678").build()) .metadata( MvhMetadata.builder() .modelProjectConsent( ModelProjectConsent.builder() .provisions( listOf( Provision.builder() .type(ConsentProvision.PERMIT) .purpose(ModelProjectConsentPurpose.SEQUENCING) .build() ) ) .build() ) .build() ) .diagnoses( listOf( MtbDiagnosis.builder() .id("1234") .patient(Reference.builder().id("TEST_12345678").build()) .code(Coding.builder().code("F79.9").version("2013").build()) .build(), ) ) .build() mockMvc .post("/mtbfile") { content = jsonMapper.writeValueAsString(mtbFile) contentType = MediaType.APPLICATION_JSON with(user("admin").roles("ADMIN")) } .andExpect { status { isAccepted() } } val captor = argumentCaptor() verify(mtbFileSender).send(captor.capture()) assertThat(captor.firstValue.content.diagnoses).hasSize(1).allMatch { diagnosis -> diagnosis.code.version == "2014" } } } }