Issue #28: Initiale Implementierung zur Ermittlung der NGS-Befund-Varianten

1 files changed, 104 insertions, 0 deletions

diff --git a/src/main/java/DNPM/analyzer/EinzelempfehlungAnalyzer.java b/src/main/java/DNPM/analyzer/EinzelempfehlungAnalyzer.java
new file mode 100644
index 0000000..101f28b
--- /dev/null
+++ b/src/main/java/DNPM/analyzer/EinzelempfehlungAnalyzer.java
@@ -0,0 +1,104 @@
+package DNPM.analyzer;
+
+import DNPM.dto.Variant;
+import DNPM.security.DelegatingDataBasedPermissionEvaluator;
+import DNPM.services.molekulargenetik.MolekulargenetikFormService;
+import de.itc.onkostar.api.Disease;
+import de.itc.onkostar.api.IOnkostarApi;
+import de.itc.onkostar.api.Procedure;
+import de.itc.onkostar.api.analysis.AnalyzerRequirement;
+import de.itc.onkostar.api.analysis.IProcedureAnalyzer;
+import de.itc.onkostar.api.analysis.OnkostarPluginType;
+import org.springframework.stereotype.Component;
+
+import java.util.List;
+import java.util.Map;
+
+/**
+ * Diese Klasse implementiert ein Plugin, welches Funktionen für DNPM UF Einzelempfehlung bereit stellt.
+ *
+ * @since 0.2.0
+ */
+@Component
+public class EinzelempfehlungAnalyzer implements IProcedureAnalyzer {
+
+    private final IOnkostarApi onkostarApi;
+
+    private final MolekulargenetikFormService molekulargenetikFormService;
+
+    private final DelegatingDataBasedPermissionEvaluator permissionEvaluator;
+
+    public EinzelempfehlungAnalyzer(
+            final IOnkostarApi onkostarApi,
+            final MolekulargenetikFormService molekulargenetikFormService,
+            final DelegatingDataBasedPermissionEvaluator permissionEvaluator
+    ) {
+        this.onkostarApi = onkostarApi;
+        this.molekulargenetikFormService = molekulargenetikFormService;
+        this.permissionEvaluator = permissionEvaluator;
+    }
+
+    @Override
+    public OnkostarPluginType getType() {
+        return OnkostarPluginType.BACKEND_SERVICE;
+    }
+
+    @Override
+    public String getVersion() {
+        return "0.1.0";
+    }
+
+    @Override
+    public String getName() {
+        return "DNPM Einzelempfehlung Backend Service";
+    }
+
+    @Override
+    public String getDescription() {
+        return "Stellt Funktionen zur Nutzung im Therapieplan-Unterformular für Einzelempfehlungen bereit";
+    }
+
+    /**
+     * @deprecated
+     */
+    @Override
+    public boolean isRelevantForDeletedProcedure() {
+        return false;
+    }
+
+    @Override
+    public boolean isRelevantForAnalyzer(Procedure procedure, Disease disease) {
+        return false;
+    }
+
+    @Override
+    public boolean isSynchronous() {
+        return false;
+    }
+
+    @Override
+    public AnalyzerRequirement getRequirement() {
+        return AnalyzerRequirement.PROCEDURE;
+    }
+
+    @Override
+    public void analyze(Procedure procedure, Disease disease) {
+        // No op
+    }
+
+    public List<Variant> getVariants(Map<String, Object> input) {
+        var procedureId = AnalyzerUtils.getRequiredId(input, "id");
+
+        if (procedureId.isEmpty()) {
+            return List.of();
+        }
+
+        var procedure = onkostarApi.getProcedure(procedureId.get());
+        if (null == procedure) {
+            return List.of();
+        }
+
+        return molekulargenetikFormService.getVariants(procedure);
+    }
+
+}