refactor: use package name following Java guidelines

11 files changed, 0 insertions, 1153 deletions

diff --git a/src/main/java/DNPM/analyzer/Analyzer.java b/src/main/java/DNPM/analyzer/Analyzer.java
deleted file mode 100644
index fd2fdec..0000000
--- a/src/main/java/DNPM/analyzer/Analyzer.java
+++ /dev/null
@@ -1,12 +0,0 @@
-package DNPM.analyzer;
-
-import de.itc.onkostar.api.analysis.OnkostarPluginType;
-
-public abstract class Analyzer implements IPluginPart {
-
-    @Override
-    public final OnkostarPluginType getType() {
-        return OnkostarPluginType.ANALYZER;
-    }
-
-}
diff --git a/src/main/java/DNPM/analyzer/AnalyzerUtils.java b/src/main/java/DNPM/analyzer/AnalyzerUtils.java
deleted file mode 100644
index dfa4c0d..0000000
--- a/src/main/java/DNPM/analyzer/AnalyzerUtils.java
+++ /dev/null
@@ -1,145 +0,0 @@
-package DNPM.analyzer;
-
-import java.util.Map;
-import java.util.Optional;
-
-/**
- * Klasse mit Hilfsfunktionen für Analyzer
- *
- * @since 0.1.0
- */
-public class AnalyzerUtils {
-
-    private AnalyzerUtils() {}
-
-    /**
-     * Prüft, ob in InputMap einen Eintrag mit key <code>key</code> und Typ <code>type</code>
-     * gefunden wurde.
-     *
-     * @param input InputMap
-     * @param key Key des Werts
-     * @param type Typ des Werts
-     * @return <code>true</code>>, wenn ein Wert von dem Typ gefunden wurde
-     */
-    public static boolean requiredValuePresent(final Map<String, Object> input, final String key, final Class<?> type) {
-        var value = input.get(key);
-
-        if (null == value) {
-            return false;
-        }
-
-        return type.isInstance(value);
-    }
-
-    /**
-     * Übergibt ein Optional mit Wert, wenn in InputMap ein Eintrag mit key <code>key</code> und Typ <code>type</code>
-     * gefunden wurde. Anderenfalls ein leeres Optional
-     *
-     * <p><b>Beispiel</b>
-     * <pre>
-     *     var id = AnalyzerUtils.getRequiredValue(input, "id", Integer.class);
-     *     if (id.isEmpty()) {
-     *         logger.error("Keine ID angegeben!");
-     *         return false;
-     *     }
-     *
-     *     var idNummer = id.get();
-     *     ...
-     * </pre>
-     *
-     * @param input InputMap
-     * @param key Key des Werts
-     * @param type Typ des Werts
-     * @return Optional mit entsprechendem Wert oder leeres Optional
-     */
-    public static <T> Optional<T> getRequiredValue(final Map<String, Object> input, final String key, final Class<T> type) {
-        if (! requiredValuePresent(input, key, type)) {
-            return Optional.empty();
-        }
-
-        @SuppressWarnings("unchecked")
-        var result = Optional.of((T)input.get(key));
-
-        return result;
-    }
-
-    /**
-     * Prüft, ob ein Wert in der InputMap als Zeichenkette dem angegebenen RegExp entspricht
-     *
-     * @param input InputMap
-     * @param key Key des Werts
-     * @param regexp Der zu prüfende reguläre Ausdruck
-     * @return <code>true</code>>, wenn ein Wert gefunden wurde, der dem RegExp entspricht
-     */
-    public static boolean requiredValueMatches(final Map<String, Object> input, final String key, final String regexp) {
-        var value = input.get(key);
-
-        if (null == value) {
-            return false;
-        }
-
-        return value.toString().matches(regexp);
-    }
-
-    /**
-     * Übergibt ein Optional mit dem Wert als Zeichenkette, wenn er dem angegebenen RegExp entspricht.
-     * Hierzu wird die Methode <code>toString()</code> auf den Wert angewendet.
-     *
-     * @param input InputMap
-     * @param key Key des Werts
-     * @param regexp Der zu prüfende reguläre Ausdruck
-     * @return Optional mit entsprechendem Wert als Zeichenkette oder leeres Optional
-     */
-    public static Optional<String> getRequiredValueMatching(final Map<String, Object> input, final String key, final String regexp) {
-        if (! requiredValueMatches(input, key, regexp)) {
-            return Optional.empty();
-        }
-
-        return Optional.of(input.get(key).toString());
-    }
-
-    /**
-     * Prüft, ob ein Wert in der InputMap eine ID ist und damit eine Zahl größer Null ist.
-     *
-     * @param input InputMap
-     * @param key Key des Werts
-     * @return <code>true</code>>, wenn ein Wert gefunden wurde, der dem RegExp entspricht
-     */
-    public static boolean requiredValueIsId(final Map<String, Object> input, final String key) {
-        return requiredValuePresent(input, key, Integer.class) && Integer.parseInt(input.get(key).toString()) > 0;
-    }
-
-    /**
-     * Übergibt ein Optional, wenn der Wert eine ID ist und damit eine Zahl größer Null ist.
-     * <p><b>Beispiel</b>
-     * <pre>
-     *     var id = AnalyzerUtils.getRequiredId(input, "id");
-     *     if (id.isEmpty()) {
-     *         logger.error("Keine gültige ID angegeben!");
-     *         return false;
-     *     }
-     *
-     *     // Ist hier immer größer als Null
-     *     var idNummer = id.get();
-     *     ...
-     * </pre>
-     *
-     * @param input InputMap
-     * @param key Key des Werts
-     * @return Optional mit entsprechendem Wert oder leeres Optional
-     */
-    public static Optional<Integer> getRequiredId(final Map<String, Object> input, final String key) {
-        if (! requiredValuePresent(input, key, Integer.class)) {
-            return Optional.empty();
-        }
-
-        var id = (int)input.get(key);
-
-        if (id > 0) {
-            return Optional.of(id);
-        }
-
-        return Optional.empty();
-    }
-
-}
diff --git a/src/main/java/DNPM/analyzer/BackendService.java b/src/main/java/DNPM/analyzer/BackendService.java
deleted file mode 100644
index 84895dd..0000000
--- a/src/main/java/DNPM/analyzer/BackendService.java
+++ /dev/null
@@ -1,25 +0,0 @@
-package DNPM.analyzer;
-
-import de.itc.onkostar.api.Disease;
-import de.itc.onkostar.api.Procedure;
-import de.itc.onkostar.api.analysis.OnkostarPluginType;
-
-public abstract class BackendService implements IPluginPart {
-
-    @Override
-    public final OnkostarPluginType getType() {
-        return OnkostarPluginType.BACKEND_SERVICE;
-    }
-
-    /**
-     * Ein Backend-Service verwendet die Methode nicht, daher wird hier eine final Stub-Implementierung
-     * verwendet, die ein Überschreiben verhindert.
-     * @param procedure
-     * @param disease
-     */
-    @Override
-    public final void analyze(Procedure procedure, Disease disease) {
-        // No op
-    }
-
-}
diff --git a/src/main/java/DNPM/analyzer/ConsentManager.java b/src/main/java/DNPM/analyzer/ConsentManager.java
deleted file mode 100644
index 6051bc0..0000000
--- a/src/main/java/DNPM/analyzer/ConsentManager.java
+++ /dev/null
@@ -1,63 +0,0 @@
-package DNPM.analyzer;
-
-import DNPM.services.consent.ConsentManagerServiceFactory;
-import de.itc.onkostar.api.Disease;
-import de.itc.onkostar.api.IOnkostarApi;
-import de.itc.onkostar.api.Procedure;
-import de.itc.onkostar.api.analysis.AnalyzerRequirement;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-public class ConsentManager extends Analyzer {
-
-    private final Logger logger = LoggerFactory.getLogger(this.getClass());
-
-    private final IOnkostarApi onkostarApi;
-
-    private final ConsentManagerServiceFactory consentManagerServiceFactory;
-
-    public ConsentManager(
-            final IOnkostarApi onkostarApi,
-            final ConsentManagerServiceFactory consentManagerServiceFactory
-    ) {
-        this.onkostarApi = onkostarApi;
-        this.consentManagerServiceFactory = consentManagerServiceFactory;
-    }
-
-    @Override
-    public String getDescription() {
-        return "Aktualisiert Consent Daten in verknüpften Formularen";
-    }
-
-    @Override
-    public AnalyzerRequirement getRequirement() {
-        return AnalyzerRequirement.PROCEDURE;
-    }
-
-    @Override
-    public boolean isRelevantForAnalyzer(Procedure prozedur, Disease erkrankung) {
-        return prozedur.getFormName().equals(onkostarApi.getGlobalSetting("consentform"));
-    }
-
-    @Override
-    public boolean isRelevantForDeletedProcedure() {
-        // TODO is relevant for deleted procedure = true
-        return false;
-    }
-
-    @Override
-    public boolean isSynchronous() {
-        return true;
-    }
-
-    @Override
-    public void analyze(Procedure prozedur, Disease erkrankung) {
-        var consentManagerService = consentManagerServiceFactory.currentUsableInstance();
-        if (! consentManagerService.canApply(prozedur)) {
-            logger.error("Fehler im ConsentManagement: Kann Prozedur mit Formularnamen '{}' nicht anwenden", prozedur.getFormName());
-            return;
-        }
-        consentManagerService.applyConsent(prozedur);
-    }
-
-}
diff --git a/src/main/java/DNPM/analyzer/DNPMHelper.java b/src/main/java/DNPM/analyzer/DNPMHelper.java
deleted file mode 100644
index bb21fa0..0000000
--- a/src/main/java/DNPM/analyzer/DNPMHelper.java
+++ /dev/null
@@ -1,260 +0,0 @@
-package DNPM.analyzer;
-
-import DNPM.dto.EcogStatusWithDate;
-import DNPM.VerweisVon;
-import DNPM.security.DelegatingDataBasedPermissionEvaluator;
-import DNPM.security.IllegalSecuredObjectAccessException;
-import DNPM.security.PermissionType;
-import DNPM.services.systemtherapie.SystemtherapieService;
-import com.fasterxml.jackson.core.JsonProcessingException;
-import com.fasterxml.jackson.databind.ObjectMapper;
-import de.itc.onkostar.api.Disease;
-import de.itc.onkostar.api.IOnkostarApi;
-import de.itc.onkostar.api.Procedure;
-import de.itc.onkostar.api.analysis.AnalyzerRequirement;
-import org.hibernate.SQLQuery;
-import org.hibernate.Session;
-import org.hibernate.SessionFactory;
-import org.hibernate.transform.Transformers;
-import org.hibernate.type.StandardBasicTypes;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-import org.springframework.security.core.context.SecurityContextHolder;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-public class DNPMHelper extends BackendService {
-
-    private static final Logger logger = LoggerFactory.getLogger(DNPMHelper.class);
-
-    private final IOnkostarApi onkostarApi;
-
-    private final SystemtherapieService systemtherapieService;
-
-    private final DelegatingDataBasedPermissionEvaluator delegatingDataBasedPermissionEvaluator;
-
-    public DNPMHelper(
-            final IOnkostarApi onkostarApi,
-            final SystemtherapieService systemtherapieService,
-            final DelegatingDataBasedPermissionEvaluator permissionEvaluator
-    ) {
-        this.onkostarApi = onkostarApi;
-        this.systemtherapieService = systemtherapieService;
-        this.delegatingDataBasedPermissionEvaluator = permissionEvaluator;
-    }
-
-    @Override
-    public String getDescription() {
-        return "Methoden für DNPM-Formulare";
-    }
-
-    @Override
-    public boolean isRelevantForDeletedProcedure() {
-        return false;
-    }
-
-    @Override
-    public boolean isSynchronous() {
-        return true;
-    }
-
-    @Override
-    public AnalyzerRequirement getRequirement() {
-        return AnalyzerRequirement.PROCEDURE;
-    }
-
-    @Override
-    public boolean isRelevantForAnalyzer(Procedure entry, Disease currentDisease) {
-        // Plugin enthält nur Methoden für Formulare und soll nicht ausgeführt werden
-        return false;
-    }
-
-    @SuppressWarnings("unchecked")
-    public List<Map<String, String>> getVerweise(final Map<String, Object> input) {
-        var procedureId = AnalyzerUtils.getRequiredId(input, "ProcedureId");
-        var patientId = AnalyzerUtils.getRequiredId(input, "PatientId");
-
-        if (procedureId.isEmpty() || patientId.isEmpty()) {
-            return null;
-        }
-
-        var verbundeneFormulare = new ArrayList<Map<String, String>>();
-
-        try {
-            SessionFactory sessionFactory = onkostarApi.getSessionFactory();
-            Session session = sessionFactory.getCurrentSession();
-
-            String sql = "SELECT prozedur.id AS procedure_id, prozedur.data_form_id, data_catalogue.name AS data_catalogue, data_catalogue_entry.name AS data_catalogue_entry, data_form.description AS formname, prozedur.beginndatum AS datum " +
-                    "FROM prozedur " +
-                    "LEFT JOIN data_form_data_catalogue ON data_form_data_catalogue.data_form_id = prozedur.data_form_id " +
-                    "LEFT JOIN data_catalogue_entry ON data_catalogue_entry.data_catalogue_id = data_form_data_catalogue.data_catalogue_id " +
-                    "LEFT JOIN data_catalogue ON data_catalogue.id = data_catalogue_entry.data_catalogue_id " +
-                    "LEFT JOIN data_form ON data_form.id = prozedur.data_form_id " +
-                    "WHERE patient_id = " + patientId.get() + " " +
-                    "AND geloescht = 0 " +
-                    "AND data_catalogue_entry.type = 'formReference' " +
-                    "GROUP BY prozedur.id, prozedur.data_form_id, data_catalogue.name, data_catalogue_entry.name";
-
-            SQLQuery query = session.createSQLQuery(sql)
-                    .addScalar("procedure_id", StandardBasicTypes.INTEGER)
-                    .addScalar("data_form_id", StandardBasicTypes.INTEGER)
-                    .addScalar("data_catalogue", StandardBasicTypes.STRING)
-                    .addScalar("data_catalogue_entry", StandardBasicTypes.STRING)
-                    .addScalar("formname", StandardBasicTypes.STRING)
-                    .addScalar("datum", StandardBasicTypes.DATE);
-
-            query.setResultTransformer(Transformers.aliasToBean(VerweisVon.class));
-            List<VerweisVon> result = query.list();
-            try {
-                int value = 0;
-                for (VerweisVon verweisVon : result) {
-                    sql = verweisVon.getSQL();
-                    query = session.createSQLQuery(sql)
-                            .addScalar("value", StandardBasicTypes.INTEGER);
-                    if (query.uniqueResult() != null) {
-                        value = (Integer) query.uniqueResult();
-                    }
-                    if (value == procedureId.get()) {
-                        verbundeneFormulare.add(Map.of("formular", verweisVon.getVerbundenesFormular()));
-                        value = 0;
-                    }
-                }
-            } catch (Exception e) {
-                logger.warn("Fehler beim Hinzufügen eines Formularverweises", e);
-            }
-        } catch (Exception e) {
-            logger.error("Fehler beim Ermitteln der Formularverweise", e);
-            return null;
-        }
-        return verbundeneFormulare;
-    }
-
-    public List<Map<String, String>> getSystemischeTherapienFromDiagnose(final Map<String, Object> input) {
-        var diagnoseId = AnalyzerUtils.getRequiredId(input, "DiagnoseId");
-        if (diagnoseId.isEmpty()) {
-            logger.error("Kein Parameter 'DiagnoseId' angegeben, gebe 'null' zurück");
-            return null;
-        }
-
-        return systemtherapieService.getSystemischeTherapienFromDiagnose(diagnoseId.get());
-    }
-
-    public String getProzedurenFromDiagnose(final Map<String, Object> input) {
-        // Prozedur, Feldname, Wert
-        var dataForm = AnalyzerUtils.getRequiredValue(input, "dataForm", String.class);
-        var diagnoseId = AnalyzerUtils.getRequiredId(input, "DiagnoseId");
-        var patientId = AnalyzerUtils.getRequiredId(input, "PatientId");
-
-        if (dataForm.isEmpty() || diagnoseId.isEmpty() || patientId.isEmpty()) {
-            return "";
-        }
-
-        var formulare = new ArrayList<Map<String, Object>>();
-        List<Procedure> prozeduren = onkostarApi.getProceduresByPatientId(patientId.get());
-        for (Procedure Prozedur : prozeduren) {
-            // Formular gehört zur aktuellen Diagnose und hat den angegebenen Namen
-            if (Prozedur.getDiseaseIds().contains(diagnoseId.get()) && Prozedur.getFormName().contains(dataForm.get())) {
-                // alle Werte auslesen
-                // System.out.println(WerteListe.getKey() + ": " + WerteListe.getValue());
-                formulare.add(Map.of(
-                        "Formular", Prozedur.getFormName(),
-                        "Felder", new HashMap<>(Prozedur.getAllValues())
-                ));
-            }
-        }
-        try {
-            ObjectMapper objectMapper = new ObjectMapper();
-            return objectMapper.writeValueAsString(formulare);
-        } catch (JsonProcessingException e) {
-            logger.error("Kann Formulare nicht in JSON mappen", e);
-        }
-        return "";
-    }
-
-    public Object getEmpfehlung(final Map<String, Object> input) {
-        var procedureID = AnalyzerUtils.getRequiredId(input, "ProcedureID");
-
-        if (procedureID.isEmpty()) {
-            logger.error("Kein Parameter 'ProcedureID' angegeben, gebe 'null' zurück");
-            return null;
-        }
-
-        try {
-            SessionFactory sessionFactory = onkostarApi.getSessionFactory();
-            Session session = sessionFactory.getCurrentSession();
-            var sql = "SELECT prozedur.id, genname, geneid, geneidlink, empfehlung, beginndatum FROM prozedur "
-                    + "LEFT JOIN dk_mtb_einzelempfehlung em ON em.id = prozedur.id "
-                    + "JOIN data_form df ON prozedur.data_form_id = df.id AND df.name = 'MR.MTB_Einzelempfehlung' "
-                    + "WHERE prozedur.hauptprozedur_id = " + procedureID.get() + " AND prozedur.geloescht = 0 "
-                    + "ORDER BY beginndatum";
-
-            SQLQuery query = session.createSQLQuery(sql)
-                    .addScalar("id", StandardBasicTypes.STRING)
-                    .addScalar("genname", StandardBasicTypes.STRING)
-                    .addScalar("geneid", StandardBasicTypes.STRING)
-                    .addScalar("geneidlink", StandardBasicTypes.STRING)
-                    .addScalar("empfehlung", StandardBasicTypes.STRING)
-                    .addScalar("beginndatum", StandardBasicTypes.STRING);
-
-            @SuppressWarnings("unchecked")
-            List<String[]> rows = query.list();
-            return rows;
-        } catch (Exception e) {
-            logger.error("Fehler bei Abfrage von Empfehlungen", e);
-            return null;
-        }
-    }
-
-    public Object updateEmpfehlungPrio(final Map<String, Object> input) {
-        // Auslesen und Prüfen der Parameter aus 'input'
-        var rid = AnalyzerUtils.getRequiredId(input, "rid");
-        if (rid.isEmpty()) {
-            logger.error("Kein Parameter 'rid' angegeben, gebe 'false' zurück");
-            return false;
-        }
-
-        var strDate = AnalyzerUtils.getRequiredValueMatching(input, "bd", "[\\d]{4}-[\\d]{2}-[\\d]{2}");
-        if (strDate.isEmpty()) {
-            logger.error("Kein oder ungültiger Parameter 'bd' angegeben, gebe 'false' zurück");
-            return false;
-        }
-
-        //String strD = strDate.toString();
-        //String CompareDate = strD.substring(1, 11);
-        //DateFormat simpleDateFormat=new SimpleDateFormat("yyyy-MM-dd");
-
-        try {
-            String sql = "UPDATE prozedur SET beginndatum = '" + strDate.get() + "' WHERE id = '" + rid.get() + "' ";
-            SQLQuery result = onkostarApi.getSessionFactory().getCurrentSession().createSQLQuery(sql);
-            result.executeUpdate();
-            return true;
-        } catch (Exception e) {
-            return "Achtung: Ein Fehler ist aufgetreten, Änderung konnte nicht gespeichert werden!";
-            //return null;
-        }
-
-    }
-
-    public List<EcogStatusWithDate> getEcogStatus(final Map<String, Object> input) {
-        var pid = AnalyzerUtils.getRequiredId(input, "PatientId");
-        if (pid.isEmpty()) {
-            logger.error("Kein Parameter 'PatientId' angegeben, gebe leere Liste zurück");
-            return List.of();
-        }
-
-        var patient = onkostarApi.getPatient(pid.get());
-        if (null == patient) {
-            logger.error("Patient nicht gefunden, gebe leere Liste zurück");
-            return List.of();
-        }
-
-        if (delegatingDataBasedPermissionEvaluator.hasPermission(SecurityContextHolder.getContext().getAuthentication(), patient, PermissionType.READ)) {
-            return systemtherapieService.ecogStatus(patient);
-        }
-
-        throw new IllegalSecuredObjectAccessException("Kein Zugriff auf diesen Patienten");
-    }
-}
\ No newline at end of file
diff --git a/src/main/java/DNPM/analyzer/EinzelempfehlungAnalyzer.java b/src/main/java/DNPM/analyzer/EinzelempfehlungAnalyzer.java
deleted file mode 100644
index 1724272..0000000
--- a/src/main/java/DNPM/analyzer/EinzelempfehlungAnalyzer.java
+++ /dev/null
@@ -1,134 +0,0 @@
-package DNPM.analyzer;
-
-import DNPM.dto.Studie;
-import DNPM.dto.Variant;
-import DNPM.security.PermissionType;
-import DNPM.security.PersonPoolBasedPermissionEvaluator;
-import DNPM.services.StudienService;
-import DNPM.services.molekulargenetik.MolekulargenetikFormService;
-import de.itc.onkostar.api.Disease;
-import de.itc.onkostar.api.IOnkostarApi;
-import de.itc.onkostar.api.Procedure;
-import de.itc.onkostar.api.analysis.AnalyzerRequirement;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-import org.springframework.security.core.context.SecurityContextHolder;
-import org.springframework.stereotype.Component;
-
-import java.util.List;
-import java.util.Map;
-
-/**
- * Diese Klasse implementiert ein Plugin, welches Funktionen für DNPM UF Einzelempfehlung bereitstellt.
- *
- * @since 0.2.0
- */
-@Component
-public class EinzelempfehlungAnalyzer extends BackendService {
-
-    private final static Logger logger = LoggerFactory.getLogger(EinzelempfehlungAnalyzer.class);
-
-    private final IOnkostarApi onkostarApi;
-
-    private final MolekulargenetikFormService molekulargenetikFormService;
-
-    private final StudienService studienService;
-
-    private final PersonPoolBasedPermissionEvaluator permissionEvaluator;
-
-    public EinzelempfehlungAnalyzer(
-            final IOnkostarApi onkostarApi,
-            final StudienService studienService,
-            final MolekulargenetikFormService molekulargenetikFormService,
-            final PersonPoolBasedPermissionEvaluator permissionEvaluator
-    ) {
-        this.onkostarApi = onkostarApi;
-        this.studienService = studienService;
-        this.molekulargenetikFormService = molekulargenetikFormService;
-        this.permissionEvaluator = permissionEvaluator;
-    }
-
-    @Override
-    public String getDescription() {
-        return "Stellt Funktionen zur Nutzung im Therapieplan-Unterformular für Einzelempfehlungen bereit";
-    }
-
-    /**
-     * @deprecated
-     */
-    @Override
-    public boolean isRelevantForDeletedProcedure() {
-        return false;
-    }
-
-    @Override
-    public boolean isRelevantForAnalyzer(Procedure procedure, Disease disease) {
-        return false;
-    }
-
-    @Override
-    public boolean isSynchronous() {
-        return false;
-    }
-
-    @Override
-    public AnalyzerRequirement getRequirement() {
-        return AnalyzerRequirement.PROCEDURE;
-    }
-
-    public List<Variant> getVariants(Map<String, Object> input) {
-        var procedureId = AnalyzerUtils.getRequiredId(input, "id");
-
-        if (procedureId.isEmpty()) {
-            return List.of();
-        }
-
-        var procedure = onkostarApi.getProcedure(procedureId.get());
-        if (null == procedure) {
-            return List.of();
-        }
-
-        if (permissionEvaluator.hasPermission(SecurityContextHolder.getContext().getAuthentication(), procedure, PermissionType.READ)) {
-            return molekulargenetikFormService.getVariants(procedure);
-        } else {
-            logger.error("Security: No permission to access procedure '{}'", procedure.getId());
-            return List.of();
-        }
-    }
-
-    /**
-     * Übergibt alle Studien, deren (Kurz-)Beschreibung oder NCT-Nummer den übergebenen Eingabewert <code>q</code> enthält
-     *
-     * <p>Wurde der Eingabewert nicht angegeben oder ist leer, werden alle Studien übergeben.
-     *
-     * <p>Beispiel zur Nutzung in einem Formularscript
-     * <pre>
-     * executePluginMethod(
-     *   'TherapieplanAnalyzer',
-     *   'getStudien',
-     *   { q: 'NCT-12', inactive: true },
-     *   (response) => console.log(response),
-     *   false
-     * );
-     * </pre>
-     *
-     * @param input Map mit Eingabewerten
-     * @return Liste mit Studien
-     */
-    public List<Studie> getStudien(Map<String, Object> input) {
-        var query = AnalyzerUtils.getRequiredValue(input, "q", String.class);
-        var inactive = AnalyzerUtils.getRequiredValue(input, "inactive", Boolean.class).orElse(false);
-
-        if (query.isEmpty() || query.get().isBlank()) {
-            if (inactive) {
-                return studienService.findAll();
-            }
-            return studienService.findActive();
-        }
-        if (inactive) {
-            return studienService.findByQuery(query.get());
-        }
-        return studienService.findActiveByQuery(query.get());
-    }
-
-}
diff --git a/src/main/java/DNPM/analyzer/FollowUpAnalyzer.java b/src/main/java/DNPM/analyzer/FollowUpAnalyzer.java
deleted file mode 100644
index 07b5fa0..0000000
--- a/src/main/java/DNPM/analyzer/FollowUpAnalyzer.java
+++ /dev/null
@@ -1,103 +0,0 @@
-package DNPM.analyzer;
-
-import de.itc.onkostar.api.Disease;
-import de.itc.onkostar.api.IOnkostarApi;
-import de.itc.onkostar.api.Item;
-import de.itc.onkostar.api.Procedure;
-import de.itc.onkostar.api.analysis.AnalyseTriggerEvent;
-import de.itc.onkostar.api.analysis.AnalyzerRequirement;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-import org.springframework.stereotype.Component;
-
-import java.util.Set;
-
-/**
- * Diese Klasse implementiert ein Plugin, welches Aktionen nach Bearbeitung eines FollowUps durchführt.
- *
- * @since 0.0.2
- */
-@Component
-public class FollowUpAnalyzer extends Analyzer {
-
-    private final Logger logger = LoggerFactory.getLogger(this.getClass());
-
-    private final IOnkostarApi onkostarApi;
-
-    public FollowUpAnalyzer(IOnkostarApi onkostarApi) {
-        this.onkostarApi = onkostarApi;
-    }
-
-    @Override
-    public String getDescription() {
-        return "Aktualisiert verknüpfte Formulare nach Änderungen im FollowUp-Formular";
-    }
-
-    /**
-     * @deprecated
-     */
-    @Override
-    public boolean isRelevantForDeletedProcedure() {
-        return false;
-    }
-
-    @Override
-    public boolean isRelevantForAnalyzer(Procedure procedure, Disease disease) {
-        return null != procedure && procedure.getFormName().equals("DNPM FollowUp");
-    }
-
-    @Override
-    public boolean isSynchronous() {
-        return false;
-    }
-
-    @Override
-    public AnalyzerRequirement getRequirement() {
-        return AnalyzerRequirement.PROCEDURE;
-    }
-
-    @Override
-    public Set<AnalyseTriggerEvent> getTriggerEvents() {
-        return Set.of(
-                AnalyseTriggerEvent.EDIT_SAVE,
-                AnalyseTriggerEvent.EDIT_LOCK,
-                AnalyseTriggerEvent.REORG
-        );
-    }
-
-    @Override
-    public void analyze(Procedure procedure, Disease disease) {
-        backlinkToEinzelempfehlung(procedure);
-    }
-
-    /**
-     * Verlinke aktuelles FollowUp in angegebener Einzelempfehlung
-     *
-     * @param procedure Das FollowUp
-     */
-    private void backlinkToEinzelempfehlung(Procedure procedure) {
-        if (null == procedure.getValue("LinkTherapieempfehlung")) {
-            return;
-        }
-
-        var referencedProcedureId = procedure.getValue("LinkTherapieempfehlung");
-        if (null == referencedProcedureId || referencedProcedureId.getInt() == 0) {
-            // Alles gut, es ist keine Einzelempfehlung angegeben
-            return;
-        }
-
-        var referencedProcedure = onkostarApi.getProcedure(referencedProcedureId.getInt());
-        if (null == referencedProcedure) {
-            logger.error("Referenzierte Einzelempfehlung wurde nicht gefunden: {}", referencedProcedureId);
-            return;
-        }
-
-        referencedProcedure.setValue("refdnpmfollowup", new Item("ref_dnpm_followup", procedure.getId()));
-
-        try {
-            onkostarApi.saveProcedure(referencedProcedure);
-        } catch (Exception e) {
-            logger.error("FollowUp konnte nicht mit Einzelempfehlung verknüpft werden", e);
-        }
-    }
-}
diff --git a/src/main/java/DNPM/analyzer/IPluginPart.java b/src/main/java/DNPM/analyzer/IPluginPart.java
deleted file mode 100644
index 31e9fff..0000000
--- a/src/main/java/DNPM/analyzer/IPluginPart.java
+++ /dev/null
@@ -1,19 +0,0 @@
-package DNPM.analyzer;
-
-import de.itc.onkostar.api.analysis.IProcedureAnalyzer;
-
-public interface IPluginPart extends IProcedureAnalyzer {
-
-    default String getVersion() {
-        return "0.4.0";
-    }
-
-    default String getName() {
-        return "DNPM Plugin";
-    }
-
-    default String getDescription() {
-        return String.format("Plugin-Bestandteil '%s'", this.getClass().getSimpleName());
-    }
-
-}
diff --git a/src/main/java/DNPM/analyzer/Merkmalskatalog.java b/src/main/java/DNPM/analyzer/Merkmalskatalog.java
deleted file mode 100644
index 275fccd..0000000
--- a/src/main/java/DNPM/analyzer/Merkmalskatalog.java
+++ /dev/null
@@ -1,97 +0,0 @@
-package DNPM.analyzer;
-
-import de.itc.onkostar.api.Disease;
-import de.itc.onkostar.api.IOnkostarApi;
-import de.itc.onkostar.api.Procedure;
-import de.itc.onkostar.api.analysis.AnalyzerRequirement;
-import org.hibernate.SQLQuery;
-import org.hibernate.Session;
-import org.hibernate.SessionFactory;
-import org.hibernate.type.StandardBasicTypes;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-import java.util.List;
-import java.util.Map;
-
-public class Merkmalskatalog extends BackendService {
-
-    private final Logger logger = LoggerFactory.getLogger(this.getClass());
-
-    private final IOnkostarApi onkostarApi;
-
-    public Merkmalskatalog(final IOnkostarApi onkostarApi) {
-        this.onkostarApi = onkostarApi;
-    }
-
-    @Override
-    public String getDescription() {
-        return "Methoden für Merkmalskataloge";
-    }
-
-    @Override
-    public boolean isRelevantForDeletedProcedure() {
-        return false;
-    }
-
-    @Override
-    public boolean isSynchronous() {
-        return true;
-    }
-
-    @Override
-    public AnalyzerRequirement getRequirement() {
-        return AnalyzerRequirement.PROCEDURE;
-    }
-
-    @Override
-    public boolean isRelevantForAnalyzer(Procedure procedure, Disease currentDisease) {
-        return false;
-    }
-
-    public List<String[]> getMerkmalskatalog(final Map<String, Object> input) {
-        var merkmalskatalog = AnalyzerUtils.getRequiredValue(input, "Merkmalskatalog", String.class);
-        var spalten = AnalyzerUtils.getRequiredValue(input, "Spalten", String.class);
-
-        if (merkmalskatalog.isEmpty()) {
-            logger.error("Kein Merkmalskatalog angegeben!");
-            return null;
-        }
-
-        if (spalten.isEmpty()) {
-            logger.error("Keine Spalten angegeben!");
-            return null;
-        }
-
-        String[] spaltenArray = spalten.get().split("\\s*,\\s*");
-
-        try {
-            SQLQuery query = getSqlQuery(merkmalskatalog.get());
-
-            for (String s : spaltenArray) {
-                query.addScalar(s, StandardBasicTypes.STRING);
-            }
-
-            @SuppressWarnings("unchecked")
-            List<String[]> rows = query.list();
-            return rows;
-        } catch (Exception e) {
-            logger.error("Fehler bei der Ausführung von getMerkmalskatalog()", e);
-            return null;
-        }
-    }
-
-    private SQLQuery getSqlQuery(String merkmalskatalog) {
-        SessionFactory sessionFactory = onkostarApi.getSessionFactory();
-        Session session = sessionFactory.getCurrentSession();
-
-        String sql = "SELECT p.id, p.code, p.shortdesc, p.description, p.note, p.synonyms "
-                + "FROM property_catalogue "
-                + "LEFT JOIN property_catalogue_version ON property_catalogue_version.datacatalog_id = property_catalogue.id "
-                + "LEFT JOIN property_catalogue_version_entry p ON p.property_version_id = property_catalogue_version.id "
-                + "WHERE name = '" + merkmalskatalog + "' AND aktiv = 1 "
-                + "ORDER BY position ASC";
-
-        return session.createSQLQuery(sql);
-    }
-}
diff --git a/src/main/java/DNPM/analyzer/TherapieMitEcogAnalyzer.java b/src/main/java/DNPM/analyzer/TherapieMitEcogAnalyzer.java
deleted file mode 100644
index 46841e1..0000000
--- a/src/main/java/DNPM/analyzer/TherapieMitEcogAnalyzer.java
+++ /dev/null
@@ -1,168 +0,0 @@
-package DNPM.analyzer;
-
-import DNPM.dto.EcogStatusWithDate;
-import DNPM.services.strahlentherapie.StrahlentherapieService;
-import DNPM.services.systemtherapie.SystemtherapieService;
-import de.itc.onkostar.api.Disease;
-import de.itc.onkostar.api.IOnkostarApi;
-import de.itc.onkostar.api.Item;
-import de.itc.onkostar.api.Procedure;
-import de.itc.onkostar.api.analysis.AnalyseTriggerEvent;
-import de.itc.onkostar.api.analysis.AnalyzerRequirement;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-import org.springframework.stereotype.Component;
-
-import java.text.SimpleDateFormat;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.stream.Collectors;
-
-/**
- * Diese Klasse implementiert ein Plugin, welches Aktionen nach Bearbeitung eines Formulars zur Systemtherapie durchführt.
- *
- * @since 0.6.0
- */
-@Component
-public class TherapieMitEcogAnalyzer extends Analyzer {
-
-    private final Logger logger = LoggerFactory.getLogger(this.getClass());
-
-    private final IOnkostarApi onkostarApi;
-
-    private final StrahlentherapieService strahlentherapieService;
-    private final SystemtherapieService systemtherapieService;
-
-    public TherapieMitEcogAnalyzer(
-            final IOnkostarApi onkostarApi,
-            final StrahlentherapieService strahlentherapieService,
-            final SystemtherapieService systemtherapieService
-    ) {
-        this.onkostarApi = onkostarApi;
-        this.strahlentherapieService = strahlentherapieService;
-        this.systemtherapieService = systemtherapieService;
-    }
-
-    @Override
-    public String getDescription() {
-        return "Aktualisiert verknüpfte Formulare nach Änderungen in Formularen vom Typ Strahlen-/Systemtherapie mit ECOG-Status";
-    }
-
-    /**
-     * @deprecated
-     */
-    @Override
-    public boolean isRelevantForDeletedProcedure() {
-        return true;
-    }
-
-    @Override
-    public boolean isRelevantForAnalyzer(Procedure procedure, Disease disease) {
-        return null != procedure && null != disease && (
-                procedure.getFormName().equals("OS.Strahlentherapie")
-                        || procedure.getFormName().equals("OS.Strahlentherapie.VarianteUKW")
-                        || procedure.getFormName().equals("OS.Systemische Therapie")
-                        || procedure.getFormName().equals("OS.Systemische Therapie.VarianteUKW")
-        );
-    }
-
-    @Override
-    public boolean isSynchronous() {
-        return false;
-    }
-
-    @Override
-    public AnalyzerRequirement getRequirement() {
-        return AnalyzerRequirement.PROCEDURE;
-    }
-
-    @Override
-    public Set<AnalyseTriggerEvent> getTriggerEvents() {
-        return Set.of(
-                AnalyseTriggerEvent.EDIT_SAVE,
-                AnalyseTriggerEvent.EDIT_LOCK,
-                AnalyseTriggerEvent.REORG
-        );
-    }
-
-    @Override
-    public void analyze(Procedure procedure, Disease disease) {
-        var date = procedure.getStartDate();
-        var status = procedure.getValue("ECOGvorTherapie");
-
-        if (null == date || null == status) {
-            // Ignore
-            return;
-        }
-
-        var ecog = strahlentherapieService.ecogStatus(procedure.getPatient())
-                .stream()
-                .filter(ecogStatusWithDate -> ecogStatusWithDate.getDate().after(disease.getDiagnosisDate()))
-                .collect(Collectors.toList());
-
-        ecog.addAll(systemtherapieService.ecogStatus(procedure.getPatient())
-                .stream()
-                .filter(ecogStatusWithDate -> ecogStatusWithDate.getDate().after(disease.getDiagnosisDate()))
-                .collect(Collectors.toList()));
-
-
-        if (ecog.isEmpty()) {
-            // Nothing to do
-            return;
-        }
-
-        procedure.getPatient().getDiseases().stream()
-                .flatMap(d -> onkostarApi.getProceduresForDiseaseByForm(d.getId(), "DNPM Klinik/Anamnese").stream())
-                .forEach(p -> {
-                    var ufEcog = p.getValue("ECOGVerlauf");
-                    if (null != ufEcog && ufEcog.getValue() instanceof List) {
-                        updateExistingEcogVerlauf(p, ecog, ufEcog);
-                    } else {
-                        newEcogverlauf(p, ecog);
-                    }
-                });
-    }
-
-    private void updateExistingEcogVerlauf(Procedure p, List<EcogStatusWithDate> ecogFromCompleted, Item ufEcog) {
-        var shouldSave = false;
-        var existingDates = ufEcog.<List<Map<String, String>>>getValue().stream()
-                .map(v -> v.get("Datum"))
-                .collect(Collectors.toList());
-        for (var ecog : ecogFromCompleted) {
-            var formattedDate = new SimpleDateFormat("yyyy-MM-dd").format(ecog.getDate());
-            if (!existingDates.contains(formattedDate)) {
-                var newSubProcedure = new Procedure(onkostarApi);
-                newSubProcedure.setStartDate(ecog.getDate());
-                newSubProcedure.setValue("Datum", new Item("Datum", ecog.getDate()));
-                newSubProcedure.setValue("ECOG", new Item("ECOG", ecog.getStatus()));
-                p.addSubProcedure("ECOGVerlauf", newSubProcedure);
-                shouldSave = true;
-            }
-        }
-        if (shouldSave) {
-            try {
-                onkostarApi.saveProcedure(p, true);
-            } catch (Exception e) {
-                logger.error("Cannot update ECOG for procedure '{}'", p.getId());
-            }
-        }
-    }
-
-    private void newEcogverlauf(Procedure p, List<EcogStatusWithDate> ecogFromCompleted) {
-        p.setValue("ECOGVerlauf", new Item("ECOGVerlauf", List.of()));
-        for (var ecog : ecogFromCompleted) {
-            var newSubProcedure = new Procedure(onkostarApi);
-            newSubProcedure.setStartDate(ecog.getDate());
-            newSubProcedure.setValue("Datum", new Item("Datum", ecog.getDate()));
-            newSubProcedure.setValue("ECOG", new Item("ECOG", ecog.getStatus()));
-            p.addSubProcedure("ECOGVerlauf", newSubProcedure);
-        }
-        try {
-            onkostarApi.saveProcedure(p, true);
-        } catch (Exception e) {
-            logger.error("Create update ECOG for procedure '{}'", p.getId());
-        }
-    }
-
-}
diff --git a/src/main/java/DNPM/analyzer/TherapieplanAnalyzer.java b/src/main/java/DNPM/analyzer/TherapieplanAnalyzer.java
deleted file mode 100644
index 932cafb..0000000
--- a/src/main/java/DNPM/analyzer/TherapieplanAnalyzer.java
+++ /dev/null
@@ -1,127 +0,0 @@
-package DNPM.analyzer;
-
-import DNPM.security.DelegatingDataBasedPermissionEvaluator;
-import DNPM.security.PermissionType;
-import DNPM.services.mtb.MtbService;
-import DNPM.services.therapieplan.TherapieplanServiceFactory;
-import de.itc.onkostar.api.Disease;
-import de.itc.onkostar.api.Procedure;
-import de.itc.onkostar.api.analysis.AnalyseTriggerEvent;
-import de.itc.onkostar.api.analysis.AnalyzerRequirement;
-import org.springframework.security.core.context.SecurityContextHolder;
-import org.springframework.stereotype.Component;
-
-import java.util.Map;
-import java.util.Set;
-
-/**
- * Diese Klasse implementiert ein Plugin, welches Aktionen nach Bearbeitung eines Therapieplans durchführt.
- *
- * @since 0.0.2
- */
-@Component
-public class TherapieplanAnalyzer extends Analyzer {
-
-    private final TherapieplanServiceFactory therapieplanServiceFactory;
-
-    private final MtbService mtbService;
-
-    private final DelegatingDataBasedPermissionEvaluator permissionEvaluator;
-
-    public TherapieplanAnalyzer(
-            final TherapieplanServiceFactory therapieplanServiceFactory,
-            final MtbService mtbService,
-            final DelegatingDataBasedPermissionEvaluator permissionEvaluator
-    ) {
-        this.therapieplanServiceFactory = therapieplanServiceFactory;
-        this.mtbService = mtbService;
-        this.permissionEvaluator = permissionEvaluator;
-    }
-
-    @Override
-    public String getDescription() {
-        return "Aktualisiert Unterformulare nach Änderungen im Therapieplan-Formular";
-    }
-
-    /**
-     * @deprecated
-     */
-    @Override
-    public boolean isRelevantForDeletedProcedure() {
-        return false;
-    }
-
-    @Override
-    public boolean isRelevantForAnalyzer(Procedure procedure, Disease disease) {
-        return null != procedure && procedure.getFormName().equals("DNPM Therapieplan");
-    }
-
-    @Override
-    public boolean isSynchronous() {
-        return false;
-    }
-
-    @Override
-    public AnalyzerRequirement getRequirement() {
-        return AnalyzerRequirement.PROCEDURE;
-    }
-
-    @Override
-    public Set<AnalyseTriggerEvent> getTriggerEvents() {
-        return Set.of(
-                AnalyseTriggerEvent.EDIT_SAVE,
-                AnalyseTriggerEvent.EDIT_LOCK,
-                AnalyseTriggerEvent.REORG
-        );
-    }
-
-    @Override
-    public void analyze(Procedure procedure, Disease disease) {
-        therapieplanServiceFactory.currentUsableInstance().updateRequiredMtbEntries(procedure);
-    }
-
-    /**
-     * Übergibt den Text der referenzierten MTBs für den Protokollauszug
-     *
-     * <p>Wurde der Eingabewert <code>id</code> nicht übergeben, wird ein leerer String zurück gegeben.
-     *
-     * <p>Beispiel zur Nutzung in einem Formularscript
-     * <pre>
-     * executePluginMethod(
-     *   'TherapieplanAnalyzer',
-     *   'getProtokollauszug',
-     *   { id: 12345 },
-     *   (response) => console.log(response),
-     *   false
-     * );
-     * </pre>
-     *
-     * @param input Map mit Eingabewerten
-     * @return Zeichenkette mit Protokollauszug
-     */
-    public String getProtokollauszug(Map<String, Object> input) {
-        var procedureId = AnalyzerUtils.getRequiredId(input, "id");
-
-        if (procedureId.isEmpty()) {
-            return "";
-        }
-
-        if (
-                permissionEvaluator.hasPermission(
-                        SecurityContextHolder.getContext().getAuthentication(),
-                        procedureId.get(),
-                        Procedure.class.getSimpleName(),
-                        PermissionType.READ
-                )
-        ) {
-            return mtbService.getProtocol(
-                    therapieplanServiceFactory
-                            .currentUsableInstance()
-                            .findReferencedMtbs(procedureId.get())
-            );
-        }
-
-        return "";
-    }
-
-}