diff options
Diffstat (limited to 'src/test/java/DNPM/analyzer')
5 files changed, 0 insertions, 580 deletions
diff --git a/src/test/java/DNPM/analyzer/AnalyzerUtilsTest.java b/src/test/java/DNPM/analyzer/AnalyzerUtilsTest.java deleted file mode 100644 index c24eddf..0000000 --- a/src/test/java/DNPM/analyzer/AnalyzerUtilsTest.java +++ /dev/null @@ -1,137 +0,0 @@ -package DNPM.analyzer; - -import org.junit.jupiter.api.Test; -import org.junit.jupiter.params.ParameterizedTest; -import org.junit.jupiter.params.provider.MethodSource; - -import java.util.Map; -import java.util.Optional; -import java.util.Set; - -import static org.assertj.core.api.Assertions.assertThat; - -class AnalyzerUtilsTest { - - private final Map<String, Object> input = Map.of("value1", 1, "valueA", "A", "valueTrue", true); - - private static Set<TestTypeData> testTypeData() { - return Set.of( - new TestTypeData("value1", Integer.class).withExpectedResult(true), - new TestTypeData("valueA", String.class).withExpectedResult(true), - new TestTypeData("valueTrue", Boolean.class).withExpectedResult(true), - - new TestTypeData("value1", String.class).withExpectedResult(false), - new TestTypeData("valueA", Boolean.class).withExpectedResult(false), - new TestTypeData("valueTrue", Integer.class).withExpectedResult(false), - - new TestTypeData("value1", Boolean.class).withExpectedResult(false), - new TestTypeData("valueA", Integer.class).withExpectedResult(false), - new TestTypeData("valueTrue", String.class).withExpectedResult(false) - ); - } - - @ParameterizedTest - @MethodSource("testTypeData") - void testShouldReturnExpectedResultForTypedCheck(TestTypeData testData) { - var actual = AnalyzerUtils.requiredValuePresent(input, testData.key, testData.type); - assertThat(actual).isEqualTo(testData.result); - } - - private static Set<TestMatchData> testMatchData() { - return Set.of( - new TestMatchData("value1", "[\\d]").withExpectedResult(true), - new TestMatchData("valueA", "[A-Z]").withExpectedResult(true), - - new TestMatchData("value1", "[A-Z]").withExpectedResult(false), - new TestMatchData("valueA", "[a-z]").withExpectedResult(false), - new TestMatchData("valueA", "[\\d]").withExpectedResult(false) - ); - } - - @ParameterizedTest - @MethodSource("testMatchData") - void testShouldReturnExpectedResultForMatchCheck(TestMatchData testData) { - var actual = AnalyzerUtils.requiredValueMatches(input, testData.key, testData.regexp); - assertThat(actual).isEqualTo(testData.result); - } - - @Test - void testShouldCheckIfInputValueIsIdNumber() { - assertThat(AnalyzerUtils.requiredValueIsId(Map.of("value", 0), "value")).isFalse(); - assertThat(AnalyzerUtils.requiredValueIsId(Map.of("value", "ABC"), "value")).isFalse(); - assertThat(AnalyzerUtils.requiredValueIsId(Map.of("value", 1234), "value")).isTrue(); - } - - @Test - void testShouldReturnInputValueAsOptional() { - assertThat(AnalyzerUtils.getRequiredValue(Map.of("value", 1234), "value", Integer.class)).isEqualTo(Optional.of(1234)); - assertThat(AnalyzerUtils.getRequiredValue(Map.of("value", "ABC"), "value", String.class)).isEqualTo(Optional.of("ABC")); - - assertThat(AnalyzerUtils.getRequiredValue(Map.of("value", 1234), "value1", Integer.class)).isEmpty(); - assertThat(AnalyzerUtils.getRequiredValue(Map.of("value", "ABC"), "value1", String.class)).isEmpty(); - assertThat(AnalyzerUtils.getRequiredValue(Map.of("value", 1234), "value", String.class)).isEmpty(); - assertThat(AnalyzerUtils.getRequiredValue(Map.of("value", "ABC"), "value", Boolean.class)).isEmpty(); - } - - @Test - void testShouldReturnInputIdAsOptional() { - assertThat(AnalyzerUtils.getRequiredId(Map.of("value", 1234), "value")).isEqualTo(Optional.of(1234)); - - assertThat(AnalyzerUtils.getRequiredId(Map.of("value", 1234), "value1")).isEmpty(); - assertThat(AnalyzerUtils.getRequiredId(Map.of("value", "ABC"), "value")).isEmpty(); - assertThat(AnalyzerUtils.getRequiredId(Map.of("value", 0), "value")).isEmpty(); - } - - @Test - void testShouldReturnInputValueMatchingAsOptional() { - assertThat(AnalyzerUtils.getRequiredValueMatching(Map.of("value", 1234), "value", "[\\d]+")).isEqualTo(Optional.of("1234")); - assertThat(AnalyzerUtils.getRequiredValueMatching(Map.of("value", "ABC"), "value", "[A-Z]+")).isEqualTo(Optional.of("ABC")); - - assertThat(AnalyzerUtils.getRequiredValueMatching(Map.of("value", "ABC"), "value1", "[A-Z]+")).isEmpty(); - } - - private static class TestTypeData { - public final String key; - public final Class<?> type; - - public boolean result; - - public TestTypeData(String key, Class<?> type) { - this.key = key; - this.type = type; - } - - public TestTypeData withExpectedResult(boolean result) { - this.result = result; - return this; - } - - @Override - public String toString() { - return String.format("key: '%s', type: %s, result: %s", key, type.getSimpleName(), result); - } - } - - private static class TestMatchData { - public final String key; - public final String regexp; - - public boolean result; - - public TestMatchData(String key, String regexp) { - this.key = key; - this.regexp = regexp; - } - - public TestMatchData withExpectedResult(boolean result) { - this.result = result; - return this; - } - - @Override - public String toString() { - return String.format("key: '%s', regexp: '%s', result: %s", key, regexp, result); - } - } - -} diff --git a/src/test/java/DNPM/analyzer/EinzelempfehlungAnalyzerTest.java b/src/test/java/DNPM/analyzer/EinzelempfehlungAnalyzerTest.java deleted file mode 100644 index 69ce487..0000000 --- a/src/test/java/DNPM/analyzer/EinzelempfehlungAnalyzerTest.java +++ /dev/null @@ -1,103 +0,0 @@ -package DNPM.analyzer; - -import DNPM.security.PermissionType; -import DNPM.security.PersonPoolBasedPermissionEvaluator; -import DNPM.services.StudienService; -import DNPM.services.molekulargenetik.MolekulargenetikFormService; -import de.itc.onkostar.api.IOnkostarApi; -import de.itc.onkostar.api.Procedure; -import org.junit.jupiter.api.BeforeEach; -import org.junit.jupiter.api.Test; -import org.junit.jupiter.api.extension.ExtendWith; -import org.mockito.ArgumentCaptor; -import org.mockito.Mock; -import org.mockito.junit.jupiter.MockitoExtension; - -import java.util.HashMap; -import java.util.Map; - -import static org.assertj.core.api.Assertions.assertThat; -import static org.mockito.Mockito.*; - -@ExtendWith(MockitoExtension.class) -class EinzelempfehlungAnalyzerTest { - - private IOnkostarApi onkostarApi; - - private StudienService studienService; - - private MolekulargenetikFormService molekulargenetikFormService; - - private PersonPoolBasedPermissionEvaluator permissionEvaluator; - - private EinzelempfehlungAnalyzer analyzer; - - @BeforeEach - void setup( - @Mock IOnkostarApi onkostarApi, - @Mock StudienService studienService, - @Mock MolekulargenetikFormService molekulargenetikFormService, - @Mock PersonPoolBasedPermissionEvaluator permissionEvaluator - ) { - this.onkostarApi = onkostarApi; - this.studienService = studienService; - this.molekulargenetikFormService = molekulargenetikFormService; - this.permissionEvaluator = permissionEvaluator; - this.analyzer = new EinzelempfehlungAnalyzer(onkostarApi, studienService, molekulargenetikFormService, permissionEvaluator); - } - - @Test - void testShouldRequestVariantsFromMolekulargenetikFormService() { - doAnswer(invocationOnMock -> new Procedure(this.onkostarApi)).when(onkostarApi).getProcedure(anyInt()); - when(this.permissionEvaluator.hasPermission(any(), any(Procedure.class), any(PermissionType.class))) - .thenReturn(true); - - analyzer.getVariants(Map.of("id", 123)); - verify(molekulargenetikFormService, times(1)).getVariants(any(Procedure.class)); - } - - @Test - void shouldRequestAllStudienForEmptyQueryString() { - var input = Map.of("q", (Object) " "); - this.analyzer.getStudien(input); - - verify(studienService, times(1)).findActive(); - } - - @Test - void shouldRequestActiveStudienForEmptyInputMap() { - var input = new HashMap<String, Object>(); - this.analyzer.getStudien(input); - - verify(studienService, times(1)).findActive(); - } - - @Test - void shouldRequestFilteredActiveStudien() { - var input = Map.of("q", (Object) "NCT-123"); - this.analyzer.getStudien(input); - - var captor = ArgumentCaptor.forClass(String.class); - verify(studienService, times(1)).findActiveByQuery(captor.capture()); - assertThat(captor.getValue()).isEqualTo("NCT-123"); - } - - @Test - void shouldRequestActiveStudien() { - var input = Map.of("q", (Object) ""); - this.analyzer.getStudien(input); - - verify(studienService, times(1)).findActive(); - } - - @Test - void shouldRequestAllFilteredtudien() { - var input = Map.of("q", (Object) "NCT-123"); - this.analyzer.getStudien(input); - - var captor = ArgumentCaptor.forClass(String.class); - verify(studienService, times(1)).findActiveByQuery(captor.capture()); - assertThat(captor.getValue()).isEqualTo("NCT-123"); - } - -} diff --git a/src/test/java/DNPM/analyzer/FollowUpAnalyzerTest.java b/src/test/java/DNPM/analyzer/FollowUpAnalyzerTest.java deleted file mode 100644 index 21db51a..0000000 --- a/src/test/java/DNPM/analyzer/FollowUpAnalyzerTest.java +++ /dev/null @@ -1,80 +0,0 @@ -package DNPM.analyzer; - -import de.itc.onkostar.api.IOnkostarApi; -import de.itc.onkostar.api.Item; -import de.itc.onkostar.api.Procedure; -import org.junit.jupiter.api.BeforeEach; -import org.junit.jupiter.api.Test; -import org.junit.jupiter.api.extension.ExtendWith; -import org.mockito.ArgumentCaptor; -import org.mockito.Mock; -import org.mockito.junit.jupiter.MockitoExtension; - -import static org.assertj.core.api.Assertions.assertThat; -import static org.mockito.Mockito.*; - -@ExtendWith(MockitoExtension.class) -class FollowUpAnalyzerTest { - - private IOnkostarApi onkostarApi; - - private FollowUpAnalyzer followUpAnalyzer; - - @BeforeEach - void setUp( - @Mock IOnkostarApi onkostarApi - ) { - this.onkostarApi = onkostarApi; - this.followUpAnalyzer = new FollowUpAnalyzer(onkostarApi); - } - - @Test - void shouldBacklinkEinzelempfehlungUsingOnkostarApi() throws Exception { - var einzelempfehlung = new Procedure(onkostarApi); - einzelempfehlung.setId(1234); - - when(onkostarApi.getProcedure(anyInt())).thenReturn(einzelempfehlung); - - var procedure = new Procedure(onkostarApi); - procedure.setId(1000); - procedure.setValue("LinkTherapieempfehlung", new Item("LinkTherapieempfehlung", 1234)); - - followUpAnalyzer.analyze(procedure, null); - - var procedureIdCaptor = ArgumentCaptor.forClass(Integer.class); - verify(onkostarApi, times(1)).getProcedure(procedureIdCaptor.capture()); - assertThat(procedureIdCaptor.getValue()).isEqualTo(einzelempfehlung.getId()); - - var procedureCaptor = ArgumentCaptor.forClass(Procedure.class); - verify(onkostarApi, times(1)).saveProcedure(procedureCaptor.capture()); - assertThat(procedureCaptor.getValue()).isNotNull(); - assertThat(procedureCaptor.getValue().getId()).isEqualTo(einzelempfehlung.getId()); - } - - @Test - void shouldNotBacklinkEinzelempfehlungIfNoEinzelempfehlungSelected() throws Exception { - var procedure = new Procedure(onkostarApi); - procedure.setId(1000); - - followUpAnalyzer.analyze(procedure, null); - - verify(onkostarApi, times(0)).getProcedure(anyInt()); - verify(onkostarApi, times(0)).saveProcedure(any(Procedure.class)); - } - - @Test - void shouldNotBacklinkEinzelempfehlungIfEinzelempfehlungDoesNotExist() throws Exception { - var procedure = new Procedure(onkostarApi); - procedure.setId(1000); - procedure.setValue("LinkTherapieempfehlung", new Item("LinkTherapieempfehlung", 1234)); - - followUpAnalyzer.analyze(procedure, null); - - var procedureIdCaptor = ArgumentCaptor.forClass(Integer.class); - verify(onkostarApi, times(1)).getProcedure(procedureIdCaptor.capture()); - assertThat(procedureIdCaptor.getValue()).isEqualTo(1234); - - verify(onkostarApi, times(0)).saveProcedure(any(Procedure.class)); - } - -} diff --git a/src/test/java/DNPM/analyzer/TherapieMitEcogAnalyzerTest.java b/src/test/java/DNPM/analyzer/TherapieMitEcogAnalyzerTest.java deleted file mode 100644 index 7f5313b..0000000 --- a/src/test/java/DNPM/analyzer/TherapieMitEcogAnalyzerTest.java +++ /dev/null @@ -1,164 +0,0 @@ -package DNPM.analyzer; - -import DNPM.dto.EcogStatusWithDate; -import DNPM.services.strahlentherapie.StrahlentherapieService; -import DNPM.services.systemtherapie.SystemtherapieService; -import de.itc.onkostar.api.*; -import org.junit.jupiter.api.BeforeEach; -import org.junit.jupiter.api.Test; -import org.junit.jupiter.api.extension.ExtendWith; -import org.mockito.ArgumentCaptor; -import org.mockito.Mock; -import org.mockito.junit.jupiter.MockitoExtension; - -import java.time.Instant; -import java.time.temporal.ChronoUnit; -import java.util.Date; -import java.util.List; - -import static org.assertj.core.api.Assertions.assertThat; -import static org.mockito.Mockito.*; - -@ExtendWith(MockitoExtension.class) -class TherapieMitEcogAnalyzerTest { - - private IOnkostarApi onkostarApi; - - private StrahlentherapieService strahlentherapieService; - - private SystemtherapieService systemtherapieService; - - private TherapieMitEcogAnalyzer therapieMitEcogAnalyzer; - - private Disease dummyDisease(int id, Date diagnosisDate) { - var disease = new Disease(onkostarApi); - disease.setId(id); - disease.setDiagnosisDate(diagnosisDate); - return disease; - } - - private Date daysPassed(int days) { - return Date.from(Instant.now().minus(days, ChronoUnit.DAYS)); - } - - @BeforeEach - void setUp( - @Mock IOnkostarApi onkostarApi, - @Mock StrahlentherapieService strahlentherapieService, - @Mock SystemtherapieService systemtherapieService - ) { - this.onkostarApi = onkostarApi; - this.strahlentherapieService = strahlentherapieService; - this.systemtherapieService = systemtherapieService; - this.therapieMitEcogAnalyzer = new TherapieMitEcogAnalyzer(onkostarApi, strahlentherapieService, systemtherapieService); - } - - @Test - void shouldInsertNewEcogStatus() throws Exception { - final var diagnosisDate = daysPassed(7); - final var ecogDate = daysPassed(1); - final var procedureDate = daysPassed(1); - - doAnswer(invocationOnMock -> List.of(new EcogStatusWithDate(ecogDate, "0"))) - .when(systemtherapieService).ecogStatus(any(Patient.class)); - - var patient = new Patient(onkostarApi); - patient.setId(1); - - var procedure = new Procedure(onkostarApi); - procedure.setId(1000); - procedure.setStartDate(procedureDate); - procedure.setEditState(ProcedureEditStateType.COMPLETED); - procedure.setPatientId(1); - procedure.setPatient(patient); - procedure.setValue("ECOGvorTherapie", new Item("ECOGvorTherapie", 1)); - - doAnswer(invocationOnMock -> List.of(dummyDisease(42, diagnosisDate))).when(this.onkostarApi).getDiseasesByPatientId(anyInt()); - - doAnswer(invocationOnMock -> List.of(procedure)).when(onkostarApi).getProceduresForDiseaseByForm(anyInt(), anyString()); - - therapieMitEcogAnalyzer.analyze(procedure, dummyDisease(10, diagnosisDate)); - - var idCaptor = ArgumentCaptor.forClass(Integer.class); - var formNameCaptor = ArgumentCaptor.forClass(String.class); - verify(onkostarApi, times(1)).getProceduresForDiseaseByForm(idCaptor.capture(), formNameCaptor.capture()); - assertThat(idCaptor.getValue()).isEqualTo(42); - assertThat(formNameCaptor.getValue()).isEqualTo("DNPM Klinik/Anamnese"); - - verify(onkostarApi, times(1)).saveProcedure(any(Procedure.class), anyBoolean()); - } - - @Test - void shouldNotModifyEcogStatusIfNoCompletedSystemTherapy() throws Exception { - final var diagnosisDate = daysPassed(7); - final var procedureDate = daysPassed(1); - - doAnswer(invocationOnMock -> List.of()) - .when(systemtherapieService).ecogStatus(any(Patient.class)); - - var patient = new Patient(onkostarApi); - patient.setId(1); - - var procedure = new Procedure(onkostarApi); - procedure.setId(1000); - procedure.setStartDate(procedureDate); - procedure.setEditState(ProcedureEditStateType.COMPLETED); - procedure.setPatientId(1); - procedure.setPatient(patient); - procedure.setValue("ECOGvorTherapie", new Item("ECOGvorTherapie", 1)); - - therapieMitEcogAnalyzer.analyze(procedure, dummyDisease(10, diagnosisDate)); - - verify(onkostarApi, times(0)).getProceduresForDiseaseByForm(anyInt(), anyString()); - verify(onkostarApi, times(0)).saveProcedure(any(Procedure.class), anyBoolean()); - } - - @Test - void shouldNotIncludeEcogStatusBeforeDiagnosisDate() throws Exception { - final var diagnosisDate = daysPassed(7); - final var ecogDate = daysPassed(28); - final var procedureDate = daysPassed(1); - - doAnswer(invocationOnMock -> List.of(new EcogStatusWithDate(ecogDate, "0"))) - .when(systemtherapieService).ecogStatus(any(Patient.class)); - - var patient = new Patient(onkostarApi); - patient.setId(1); - - var procedure = new Procedure(onkostarApi); - procedure.setId(1000); - procedure.setStartDate(procedureDate); - procedure.setEditState(ProcedureEditStateType.COMPLETED); - procedure.setPatientId(1); - procedure.setPatient(patient); - procedure.setValue("ECOGvorTherapie", new Item("ECOGvorTherapie", 1)); - - therapieMitEcogAnalyzer.analyze(procedure, dummyDisease(10, diagnosisDate)); - - verify(onkostarApi, times(0)).getProceduresForDiseaseByForm(anyInt(), anyString()); - verify(onkostarApi, times(0)).saveProcedure(any(Procedure.class), anyBoolean()); - } - - @Test - void shouldRequestEcogFromStrahlentherapieAndSystemtherapie() { - final var diagnosisDate = daysPassed(7); - final var procedureDate = daysPassed(1); - - var patient = new Patient(onkostarApi); - patient.setId(1); - - var procedure = new Procedure(onkostarApi); - procedure.setId(1000); - procedure.setStartDate(procedureDate); - procedure.setEditState(ProcedureEditStateType.COMPLETED); - procedure.setPatientId(1); - procedure.setPatient(patient); - procedure.setValue("ECOGvorTherapie", new Item("ECOGvorTherapie", 1)); - - therapieMitEcogAnalyzer.analyze(procedure, dummyDisease(10, diagnosisDate)); - - verify(strahlentherapieService, times(1)).ecogStatus(any()); - verify(systemtherapieService, times(1)).ecogStatus(any()); - } - -} diff --git a/src/test/java/DNPM/analyzer/TherapieplanAnalyzerTest.java b/src/test/java/DNPM/analyzer/TherapieplanAnalyzerTest.java deleted file mode 100644 index cd5aee1..0000000 --- a/src/test/java/DNPM/analyzer/TherapieplanAnalyzerTest.java +++ /dev/null @@ -1,96 +0,0 @@ -package DNPM.analyzer; - -import DNPM.security.DelegatingDataBasedPermissionEvaluator; -import DNPM.security.PermissionType; -import DNPM.services.FormService; -import DNPM.services.mtb.MtbService; -import DNPM.services.therapieplan.MultipleMtbTherapieplanService; -import DNPM.services.therapieplan.TherapieplanService; -import DNPM.services.therapieplan.TherapieplanServiceFactory; -import de.itc.onkostar.api.IOnkostarApi; -import de.itc.onkostar.api.Item; -import de.itc.onkostar.api.Procedure; -import org.junit.jupiter.api.BeforeEach; -import org.junit.jupiter.api.Test; -import org.junit.jupiter.api.extension.ExtendWith; -import org.mockito.ArgumentCaptor; -import org.mockito.Mock; -import org.mockito.junit.jupiter.MockitoExtension; - -import java.util.List; -import java.util.Map; - -import static org.assertj.core.api.Assertions.assertThat; -import static org.mockito.Mockito.*; - -@ExtendWith(MockitoExtension.class) -class TherapieplanAnalyzerTest { - - @Mock - private IOnkostarApi onkostarApi; - - @Mock - private FormService formService; - - @Mock - private TherapieplanServiceFactory therapieplanServiceFactory; - - @Mock - private TherapieplanService therapieplanService; - - @Mock - private MtbService mtbService; - - @Mock - private DelegatingDataBasedPermissionEvaluator permissionEvaluator; - - private TherapieplanAnalyzer therapieplanAnalyzer; - - @BeforeEach - void setUp() { - this.therapieplanAnalyzer = new TherapieplanAnalyzer(therapieplanServiceFactory, mtbService, permissionEvaluator); - } - - @Test - void shouldRunServiceMethodsOnAnalyzeCalled() { - when(this.therapieplanServiceFactory.currentUsableInstance()) - .thenReturn(new MultipleMtbTherapieplanService(onkostarApi, formService)); - - this.therapieplanAnalyzer.analyze(new Procedure(onkostarApi), null); - - verify(this.therapieplanServiceFactory, times(1)).currentUsableInstance(); - } - - @Test - void shouldRequestProtokollauszug() { - doAnswer(invocationOnMock -> { - var procedure = new Procedure(onkostarApi); - procedure.setValue("referstemtb", new Item("referstemtb", 2345)); - return List.of(procedure); - }).when(this.therapieplanService).findReferencedMtbs(anyInt()); - - when(this.therapieplanServiceFactory.currentUsableInstance()) - .thenReturn(therapieplanService); - - when(this.permissionEvaluator.hasPermission(any(), anyInt(), anyString(), any(PermissionType.class))).thenReturn(true); - - var input = Map.of("id", (Object) 1234); - this.therapieplanAnalyzer.getProtokollauszug(input); - - var captor = ArgumentCaptor.forClass(List.class); - verify(mtbService, times(1)).getProtocol(captor.capture()); - assertThat(captor.getValue()).hasSize(1); - } - - @Test - void shouldNotRequestProtokollauszugDueToNoPermission() { - when(this.permissionEvaluator.hasPermission(any(), anyInt(), anyString(), any(PermissionType.class))) - .thenReturn(false); - - var input = Map.of("id", (Object) 1234); - this.therapieplanAnalyzer.getProtokollauszug(input); - - verify(mtbService, times(0)).getProtocol(anyList()); - } - -} |