From 3afe109494e2b4a751874a027694c17f6cabc4cd Mon Sep 17 00:00:00 2001
From: Paul-Christian Volkmer
Date: Mon, 8 May 2023 16:23:52 +0200
Subject: Issue #28: Initiale Implementierung zur Ermittlung der
 NGS-Befund-Varianten

---
 .../MolekulargenetikFormService.java               | 12 ++++++++
 .../OsMolekulargenetikFormService.java             | 34 ++++++++++++++++++++++
 2 files changed, 46 insertions(+)
 create mode 100644 src/main/java/DNPM/services/molekulargenetik/MolekulargenetikFormService.java
 create mode 100644 src/main/java/DNPM/services/molekulargenetik/OsMolekulargenetikFormService.java

(limited to 'src/main/java/DNPM/services/molekulargenetik')

diff --git a/src/main/java/DNPM/services/molekulargenetik/MolekulargenetikFormService.java b/src/main/java/DNPM/services/molekulargenetik/MolekulargenetikFormService.java
new file mode 100644
index 0000000..5af03b2
--- /dev/null
+++ b/src/main/java/DNPM/services/molekulargenetik/MolekulargenetikFormService.java
@@ -0,0 +1,12 @@
+package DNPM.services.molekulargenetik;
+
+import DNPM.dto.Variant;
+import de.itc.onkostar.api.Procedure;
+
+import java.util.List;
+
+public interface MolekulargenetikFormService {
+
+    List<Variant> getVariants(Procedure procedure);
+
+}
diff --git a/src/main/java/DNPM/services/molekulargenetik/OsMolekulargenetikFormService.java b/src/main/java/DNPM/services/molekulargenetik/OsMolekulargenetikFormService.java
new file mode 100644
index 0000000..03017ad
--- /dev/null
+++ b/src/main/java/DNPM/services/molekulargenetik/OsMolekulargenetikFormService.java
@@ -0,0 +1,34 @@
+package DNPM.services.molekulargenetik;
+
+import DNPM.dto.Variant;
+import DNPM.security.FormSecured;
+import DNPM.security.PersonPoolSecured;
+import de.itc.onkostar.api.Procedure;
+
+import java.util.List;
+import java.util.Optional;
+import java.util.stream.Collectors;
+
+public class OsMolekulargenetikFormService implements MolekulargenetikFormService {
+
+    @Override
+    @FormSecured
+    @PersonPoolSecured
+    public List<Variant> getVariants(Procedure procedure) {
+        if (! "OS.Molekulargenetik".equals(procedure.getFormName())) {
+            return List.of();
+        }
+
+        var subforms = procedure.getSubProceduresMap().get("MolekulargenetischeUntersuchung");
+        if (null == subforms) {
+            return List.of();
+        }
+
+        return subforms.stream()
+                .map(Variant::fromProcedure)
+                .filter(Optional::isPresent)
+                .map(Optional::get)
+                .collect(Collectors.toList());
+
+    }
+}
-- 
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