From 84fb0d829832bf1628112376bba729422b169402 Mon Sep 17 00:00:00 2001 From: Paul-Christian Volkmer Date: Thu, 23 Oct 2025 11:08:10 +0200 Subject: refactor: change package name --- .../analyzer/EinzelempfehlungAnalyzer.java | 158 +++++++++++++++++++++ 1 file changed, 158 insertions(+) create mode 100644 src/main/java/dev/dnpm/oshelper/analyzer/EinzelempfehlungAnalyzer.java (limited to 'src/main/java/dev/dnpm/oshelper/analyzer/EinzelempfehlungAnalyzer.java') diff --git a/src/main/java/dev/dnpm/oshelper/analyzer/EinzelempfehlungAnalyzer.java b/src/main/java/dev/dnpm/oshelper/analyzer/EinzelempfehlungAnalyzer.java new file mode 100644 index 0000000..49997ed --- /dev/null +++ b/src/main/java/dev/dnpm/oshelper/analyzer/EinzelempfehlungAnalyzer.java @@ -0,0 +1,158 @@ +/* + * This file is part of onkostar-plugin-dnpm + * + * Copyright (c) 2025 the original author or authors. + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in all + * copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE + * SOFTWARE. + */ + +package dev.dnpm.oshelper.analyzer; + +import dev.dnpm.oshelper.dto.Studie; +import dev.dnpm.oshelper.dto.Variant; +import dev.dnpm.oshelper.security.PermissionType; +import dev.dnpm.oshelper.security.PersonPoolBasedPermissionEvaluator; +import dev.dnpm.oshelper.services.StudienService; +import dev.dnpm.oshelper.services.molekulargenetik.MolekulargenetikFormService; +import de.itc.onkostar.api.Disease; +import de.itc.onkostar.api.IOnkostarApi; +import de.itc.onkostar.api.Procedure; +import de.itc.onkostar.api.analysis.AnalyzerRequirement; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.security.core.context.SecurityContextHolder; +import org.springframework.stereotype.Component; + +import java.util.List; +import java.util.Map; + +/** + * Diese Klasse implementiert ein Plugin, welches Funktionen für DNPM UF Einzelempfehlung bereitstellt. + * + * @since 0.2.0 + */ +@Component +public class EinzelempfehlungAnalyzer extends BackendService { + + private final static Logger logger = LoggerFactory.getLogger(EinzelempfehlungAnalyzer.class); + + private final IOnkostarApi onkostarApi; + + private final MolekulargenetikFormService molekulargenetikFormService; + + private final StudienService studienService; + + private final PersonPoolBasedPermissionEvaluator permissionEvaluator; + + public EinzelempfehlungAnalyzer( + final IOnkostarApi onkostarApi, + final StudienService studienService, + final MolekulargenetikFormService molekulargenetikFormService, + final PersonPoolBasedPermissionEvaluator permissionEvaluator + ) { + this.onkostarApi = onkostarApi; + this.studienService = studienService; + this.molekulargenetikFormService = molekulargenetikFormService; + this.permissionEvaluator = permissionEvaluator; + } + + @Override + public String getDescription() { + return "Stellt Funktionen zur Nutzung im Therapieplan-Unterformular für Einzelempfehlungen bereit"; + } + + /** + * @deprecated + */ + @Override + public boolean isRelevantForDeletedProcedure() { + return false; + } + + @Override + public boolean isRelevantForAnalyzer(Procedure procedure, Disease disease) { + return false; + } + + @Override + public boolean isSynchronous() { + return false; + } + + @Override + public AnalyzerRequirement getRequirement() { + return AnalyzerRequirement.PROCEDURE; + } + + public List getVariants(Map input) { + var procedureId = AnalyzerUtils.getRequiredId(input, "id"); + + if (procedureId.isEmpty()) { + return List.of(); + } + + var procedure = onkostarApi.getProcedure(procedureId.get()); + if (null == procedure) { + return List.of(); + } + + if (permissionEvaluator.hasPermission(SecurityContextHolder.getContext().getAuthentication(), procedure, PermissionType.READ)) { + return molekulargenetikFormService.getVariants(procedure); + } else { + logger.error("Security: No permission to access procedure '{}'", procedure.getId()); + return List.of(); + } + } + + /** + * Übergibt alle Studien, deren (Kurz-)Beschreibung oder NCT-Nummer den übergebenen Eingabewert q enthält + * + *

Wurde der Eingabewert nicht angegeben oder ist leer, werden alle Studien übergeben. + * + *

Beispiel zur Nutzung in einem Formularscript + * 

+     * executePluginMethod(
+     *   'TherapieplanAnalyzer',
+     *   'getStudien',
+     *   { q: 'NCT-12', inactive: true },
+     *   (response) => console.log(response),
+     *   false
+     * );
+     *
+ * + * @param input Map mit Eingabewerten + * @return Liste mit Studien + */ + public List getStudien(Map input) { + var query = AnalyzerUtils.getRequiredValue(input, "q", String.class); + var inactive = AnalyzerUtils.getRequiredValue(input, "inactive", Boolean.class).orElse(false); + + if (query.isEmpty() || query.get().isBlank()) { + if (inactive) { + return studienService.findAll(); + } + return studienService.findActive(); + } + if (inactive) { + return studienService.findByQuery(query.get()); + } + return studienService.findActiveByQuery(query.get()); + } + +} -- cgit v1.2.3