From cc27edc544cec1b892e7c224aec9e6e42342aa39 Mon Sep 17 00:00:00 2001
From: Paul-Christian Volkmer
Date: Sat, 21 Sep 2024 22:10:24 +0200
Subject: refactor: use package name following Java guidelines

---
 src/test/java/dev/dnpm/dto/VariantTest.java | 103 ++++++++++++++++++++++++++++
 1 file changed, 103 insertions(+)
 create mode 100644 src/test/java/dev/dnpm/dto/VariantTest.java

(limited to 'src/test/java/dev/dnpm/dto')

diff --git a/src/test/java/dev/dnpm/dto/VariantTest.java b/src/test/java/dev/dnpm/dto/VariantTest.java
new file mode 100644
index 0000000..f699f0c
--- /dev/null
+++ b/src/test/java/dev/dnpm/dto/VariantTest.java
@@ -0,0 +1,103 @@
+package dev.dnpm.dto;
+
+import de.itc.onkostar.api.Item;
+import de.itc.onkostar.api.Procedure;
+import org.junit.jupiter.api.Test;
+
+import static org.assertj.core.api.Assertions.assertThat;
+
+public class VariantTest {
+
+    @Test
+    void testShouldMapVariantFromProcedureForSimpleVariant() {
+        var procedure = new Procedure(null);
+        procedure.setId(12345);
+        procedure.setFormName("OS.Molekulargenetische Untersuchung");
+
+        procedure.setValue("Ergebnis", new Item("Ergebnis", "P"));
+        procedure.setValue("Untersucht", new Item("Untersucht", "BRAF"));
+        procedure.setValue("ExonInt", new Item("ExonInt", 123));
+        procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2"));
+
+        var actual = Variant.fromProcedure(procedure);
+
+        assertThat(actual).isPresent();
+        assertThat(actual.get().getId()).isEqualTo(12345);
+        assertThat(actual.get().getErgebnis()).isEqualTo("Einfache Variante (Mutation)");
+        assertThat(actual.get().getGen()).isEqualTo("BRAF");
+        assertThat(actual.get().getExon()).isEqualTo("123");
+        assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");
+    }
+
+    @Test
+    void testShouldMapVariantFromProcedureForCopyNumberVariation() {
+        var procedure = new Procedure(null);
+        procedure.setId(12345);
+        procedure.setFormName("OS.Molekulargenetische Untersuchung");
+
+        procedure.setValue("Ergebnis", new Item("Ergebnis", "CNV"));
+        procedure.setValue("Untersucht", new Item("Untersucht", "BRAF"));
+        procedure.setValue("ExonInt", new Item("ExonInt", 123));
+        procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2"));
+
+        var actual = Variant.fromProcedure(procedure);
+
+        assertThat(actual).isPresent();
+        assertThat(actual.get().getId()).isEqualTo(12345);
+        assertThat(actual.get().getErgebnis()).isEqualTo("Copy Number Variation (CNV)");
+        assertThat(actual.get().getGen()).isEqualTo("BRAF");
+        assertThat(actual.get().getExon()).isEqualTo("123");
+        assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");
+    }
+
+    @Test
+    void testShouldMapVariantFromProcedureForFusion() {
+        var procedure = new Procedure(null);
+        procedure.setId(12345);
+        procedure.setFormName("OS.Molekulargenetische Untersuchung");
+
+        procedure.setValue("Ergebnis", new Item("Ergebnis", "F"));
+        procedure.setValue("Untersucht", new Item("Untersucht", "BRAF"));
+        procedure.setValue("ExonInt", new Item("ExonInt", 123));
+        procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2"));
+
+        var actual = Variant.fromProcedure(procedure);
+
+        assertThat(actual).isPresent();
+        assertThat(actual.get().getId()).isEqualTo(12345);
+        assertThat(actual.get().getErgebnis()).isEqualTo("Fusion (Translokation Inversion Insertion)");
+        assertThat(actual.get().getGen()).isEqualTo("BRAF");
+        assertThat(actual.get().getExon()).isEqualTo("123");
+        assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");
+    }
+
+    @Test
+    void testShouldNotMapVariantFromProcedureForUnknownVariant() {
+        var procedure = new Procedure(null);
+        procedure.setId(12345);
+        procedure.setFormName("OS.Molekulargenetische Untersuchung");
+
+        procedure.setValue("Ergebnis", new Item("Ergebnis", "X"));
+        procedure.setValue("Untersucht", new Item("Untersucht", "BRAF"));
+        procedure.setValue("ExonInt", new Item("ExonInt", 123));
+        procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2"));
+
+        var actual = Variant.fromProcedure(procedure);
+
+        assertThat(actual).isEmpty();
+    }
+
+    @Test
+    void testShouldNotMapVariantFromUnknownProcedureForm() {
+        var procedure = new Procedure(null);
+        procedure.setId(12345);
+        procedure.setFormName("ABC.Irgendwas");
+
+        procedure.setValue("Testfeld", new Item("Testfeld", "T"));
+
+        var actual = Variant.fromProcedure(procedure);
+
+        assertThat(actual).isEmpty();
+    }
+
+}
-- 
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