From fb91356b7777dfa5b6088bcc3a48b43924c1c0fd Mon Sep 17 00:00:00 2001 From: Paul-Christian Volkmer Date: Thu, 3 Sep 2026 14:35:10 +0200 Subject: build: apply Spotless plugin (#293) --- .../java/dev/dnpm/oshelper/dto/VariantTest.java | 187 ++++++++++----------- 1 file changed, 93 insertions(+), 94 deletions(-) (limited to 'src/test/java/dev/dnpm/oshelper/dto/VariantTest.java') diff --git a/src/test/java/dev/dnpm/oshelper/dto/VariantTest.java b/src/test/java/dev/dnpm/oshelper/dto/VariantTest.java index aa39ba3..9ab2b3d 100644 --- a/src/test/java/dev/dnpm/oshelper/dto/VariantTest.java +++ b/src/test/java/dev/dnpm/oshelper/dto/VariantTest.java @@ -19,104 +19,103 @@ package dev.dnpm.oshelper.dto; +import static org.assertj.core.api.Assertions.assertThat; + import de.itc.onkostar.api.Item; import de.itc.onkostar.api.Procedure; import org.junit.jupiter.api.Test; -import static org.assertj.core.api.Assertions.assertThat; - public class VariantTest { - @Test - void testShouldMapVariantFromProcedureForSimpleVariant() { - var procedure = new Procedure(null); - procedure.setId(12345); - procedure.setFormName("OS.Molekulargenetische Untersuchung"); - - procedure.setValue("Ergebnis", new Item("Ergebnis", "P")); - procedure.setValue("Untersucht", new Item("Untersucht", "BRAF")); - procedure.setValue("ExonInt", new Item("ExonInt", 123)); - procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2")); - - var actual = Variant.fromProcedure(procedure); - - assertThat(actual).isPresent(); - assertThat(actual.get().getId()).isEqualTo(12345); - assertThat(actual.get().getErgebnis()).isEqualTo("Einfache Variante (Mutation)"); - assertThat(actual.get().getGen()).isEqualTo("BRAF"); - assertThat(actual.get().getExon()).isEqualTo("123"); - assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); - } - - @Test - void testShouldMapVariantFromProcedureForCopyNumberVariation() { - var procedure = new Procedure(null); - procedure.setId(12345); - procedure.setFormName("OS.Molekulargenetische Untersuchung"); - - procedure.setValue("Ergebnis", new Item("Ergebnis", "CNV")); - procedure.setValue("Untersucht", new Item("Untersucht", "BRAF")); - procedure.setValue("ExonInt", new Item("ExonInt", 123)); - procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2")); - - var actual = Variant.fromProcedure(procedure); - - assertThat(actual).isPresent(); - assertThat(actual.get().getId()).isEqualTo(12345); - assertThat(actual.get().getErgebnis()).isEqualTo("Copy Number Variation (CNV)"); - assertThat(actual.get().getGen()).isEqualTo("BRAF"); - assertThat(actual.get().getExon()).isEqualTo("123"); - assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); - } - - @Test - void testShouldMapVariantFromProcedureForFusion() { - var procedure = new Procedure(null); - procedure.setId(12345); - procedure.setFormName("OS.Molekulargenetische Untersuchung"); - - procedure.setValue("Ergebnis", new Item("Ergebnis", "F")); - procedure.setValue("Untersucht", new Item("Untersucht", "BRAF")); - procedure.setValue("ExonInt", new Item("ExonInt", 123)); - procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2")); - - var actual = Variant.fromProcedure(procedure); - - assertThat(actual).isPresent(); - assertThat(actual.get().getId()).isEqualTo(12345); - assertThat(actual.get().getErgebnis()).isEqualTo("Fusion (Translokation Inversion Insertion)"); - assertThat(actual.get().getGen()).isEqualTo("BRAF"); - assertThat(actual.get().getExon()).isEqualTo("123"); - assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); - } - - @Test - void testShouldNotMapVariantFromProcedureForUnknownVariant() { - var procedure = new Procedure(null); - procedure.setId(12345); - procedure.setFormName("OS.Molekulargenetische Untersuchung"); - - procedure.setValue("Ergebnis", new Item("Ergebnis", "X")); - procedure.setValue("Untersucht", new Item("Untersucht", "BRAF")); - procedure.setValue("ExonInt", new Item("ExonInt", 123)); - procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2")); - - var actual = Variant.fromProcedure(procedure); - - assertThat(actual).isEmpty(); - } - - @Test - void testShouldNotMapVariantFromUnknownProcedureForm() { - var procedure = new Procedure(null); - procedure.setId(12345); - procedure.setFormName("ABC.Irgendwas"); - - procedure.setValue("Testfeld", new Item("Testfeld", "T")); - - var actual = Variant.fromProcedure(procedure); - - assertThat(actual).isEmpty(); - } - + @Test + void testShouldMapVariantFromProcedureForSimpleVariant() { + var procedure = new Procedure(null); + procedure.setId(12345); + procedure.setFormName("OS.Molekulargenetische Untersuchung"); + + procedure.setValue("Ergebnis", new Item("Ergebnis", "P")); + procedure.setValue("Untersucht", new Item("Untersucht", "BRAF")); + procedure.setValue("ExonInt", new Item("ExonInt", 123)); + procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2")); + + var actual = Variant.fromProcedure(procedure); + + assertThat(actual).isPresent(); + assertThat(actual.get().getId()).isEqualTo(12345); + assertThat(actual.get().getErgebnis()).isEqualTo("Einfache Variante (Mutation)"); + assertThat(actual.get().getGen()).isEqualTo("BRAF"); + assertThat(actual.get().getExon()).isEqualTo("123"); + assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); + } + + @Test + void testShouldMapVariantFromProcedureForCopyNumberVariation() { + var procedure = new Procedure(null); + procedure.setId(12345); + procedure.setFormName("OS.Molekulargenetische Untersuchung"); + + procedure.setValue("Ergebnis", new Item("Ergebnis", "CNV")); + procedure.setValue("Untersucht", new Item("Untersucht", "BRAF")); + procedure.setValue("ExonInt", new Item("ExonInt", 123)); + procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2")); + + var actual = Variant.fromProcedure(procedure); + + assertThat(actual).isPresent(); + assertThat(actual.get().getId()).isEqualTo(12345); + assertThat(actual.get().getErgebnis()).isEqualTo("Copy Number Variation (CNV)"); + assertThat(actual.get().getGen()).isEqualTo("BRAF"); + assertThat(actual.get().getExon()).isEqualTo("123"); + assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); + } + + @Test + void testShouldMapVariantFromProcedureForFusion() { + var procedure = new Procedure(null); + procedure.setId(12345); + procedure.setFormName("OS.Molekulargenetische Untersuchung"); + + procedure.setValue("Ergebnis", new Item("Ergebnis", "F")); + procedure.setValue("Untersucht", new Item("Untersucht", "BRAF")); + procedure.setValue("ExonInt", new Item("ExonInt", 123)); + procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2")); + + var actual = Variant.fromProcedure(procedure); + + assertThat(actual).isPresent(); + assertThat(actual.get().getId()).isEqualTo(12345); + assertThat(actual.get().getErgebnis()).isEqualTo("Fusion (Translokation Inversion Insertion)"); + assertThat(actual.get().getGen()).isEqualTo("BRAF"); + assertThat(actual.get().getExon()).isEqualTo("123"); + assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); + } + + @Test + void testShouldNotMapVariantFromProcedureForUnknownVariant() { + var procedure = new Procedure(null); + procedure.setId(12345); + procedure.setFormName("OS.Molekulargenetische Untersuchung"); + + procedure.setValue("Ergebnis", new Item("Ergebnis", "X")); + procedure.setValue("Untersucht", new Item("Untersucht", "BRAF")); + procedure.setValue("ExonInt", new Item("ExonInt", 123)); + procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2")); + + var actual = Variant.fromProcedure(procedure); + + assertThat(actual).isEmpty(); + } + + @Test + void testShouldNotMapVariantFromUnknownProcedureForm() { + var procedure = new Procedure(null); + procedure.setId(12345); + procedure.setFormName("ABC.Irgendwas"); + + procedure.setValue("Testfeld", new Item("Testfeld", "T")); + + var actual = Variant.fromProcedure(procedure); + + assertThat(actual).isEmpty(); + } } -- cgit v1.2.3