Package dev.pcvolkmer.mv64e.model

Class RnaSeq

java.lang.Object

dev.pcvolkmer.mv64e.model.RnaSeq

public class RnaSeq
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	RnaSeq.Builder

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	JSON_PROPERTY_COHORT_RANKING
static java.lang.String	JSON_PROPERTY_EXTERNAL_IDS
static java.lang.String	JSON_PROPERTY_GENE
static java.lang.String	JSON_PROPERTY_ID
static java.lang.String	JSON_PROPERTY_LIBRARY_SIZE
static java.lang.String	JSON_PROPERTY_LOCALIZATION
static java.lang.String	JSON_PROPERTY_PATIENT
static java.lang.String	JSON_PROPERTY_RAW_COUNTS
static java.lang.String	JSON_PROPERTY_TISSUE_CORRECTED_EXPRESSION
static java.lang.String	JSON_PROPERTY_TRANSCRIPT_ID
static java.lang.String	JSON_PROPERTY_TRANSCRIPTS_PER_MILLION
static java.lang.String	JSON_PROPERTY_VARIANT

Constructor Summary

Constructors

Constructor	Description
RnaSeq()

Method Summary

Modifier and Type	Method	Description
RnaSeq	addExternalIdsItem(VariantExternalId externalIdsItem)
RnaSeq	addLocalizationItem(BaseVariantLocalizationCoding localizationItem)
static RnaSeq.Builder	builder()
RnaSeq	cohortRanking(@Nullable java.lang.Integer cohortRanking)
boolean	equals(java.lang.Object o)
RnaSeq	externalIds(@Nullable java.util.List<VariantExternalId> externalIds)
RnaSeq	gene(@Nullable Coding gene)
@Nullable java.lang.Integer	getCohortRanking()
@Nullable java.util.List<VariantExternalId>	getExternalIds()
@Nullable Coding	getGene()
java.lang.String	getId()
@Nullable java.lang.Integer	getLibrarySize()
@Nullable java.util.Set<BaseVariantLocalizationCoding>	getLocalization()
Reference	getPatient()
java.lang.Integer	getRawCounts()
@Nullable java.lang.Boolean	getTissueCorrectedExpression()
@Nullable TranscriptId	getTranscriptId()
java.math.BigDecimal	getTranscriptsPerMillion()
Reference	getVariant()
int	hashCode()
RnaSeq	id(java.lang.String id)
RnaSeq	librarySize(@Nullable java.lang.Integer librarySize)
RnaSeq	localization(@Nullable java.util.Set<BaseVariantLocalizationCoding> localization)
RnaSeq	patient(Reference patient)
RnaSeq	rawCounts(java.lang.Integer rawCounts)
void	setCohortRanking(@Nullable java.lang.Integer cohortRanking)
void	setExternalIds(@Nullable java.util.List<VariantExternalId> externalIds)
void	setGene(@Nullable Coding gene)
void	setId(java.lang.String id)
void	setLibrarySize(@Nullable java.lang.Integer librarySize)
void	setLocalization(@Nullable java.util.Set<BaseVariantLocalizationCoding> localization)
void	setPatient(Reference patient)
void	setRawCounts(java.lang.Integer rawCounts)
void	setTissueCorrectedExpression(@Nullable java.lang.Boolean tissueCorrectedExpression)
void	setTranscriptId(@Nullable TranscriptId transcriptId)
void	setTranscriptsPerMillion(java.math.BigDecimal transcriptsPerMillion)
void	setVariant(Reference variant)
RnaSeq	tissueCorrectedExpression(@Nullable java.lang.Boolean tissueCorrectedExpression)
RnaSeq.Builder	toBuilder()
java.lang.String	toString()
RnaSeq	transcriptId(@Nullable TranscriptId transcriptId)
RnaSeq	transcriptsPerMillion(java.math.BigDecimal transcriptsPerMillion)
RnaSeq	variant(Reference variant)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

JSON_PROPERTY_LIBRARY_SIZE

public static final java.lang.String JSON_PROPERTY_LIBRARY_SIZE

See Also:

Constant Field Values

JSON_PROPERTY_LOCALIZATION

public static final java.lang.String JSON_PROPERTY_LOCALIZATION

See Also:

Constant Field Values

JSON_PROPERTY_TRANSCRIPTS_PER_MILLION

public static final java.lang.String JSON_PROPERTY_TRANSCRIPTS_PER_MILLION

See Also:

Constant Field Values

JSON_PROPERTY_COHORT_RANKING

public static final java.lang.String JSON_PROPERTY_COHORT_RANKING

See Also:

Constant Field Values

JSON_PROPERTY_RAW_COUNTS

public static final java.lang.String JSON_PROPERTY_RAW_COUNTS

See Also:

Constant Field Values

JSON_PROPERTY_VARIANT

public static final java.lang.String JSON_PROPERTY_VARIANT

See Also:

Constant Field Values

JSON_PROPERTY_TRANSCRIPT_ID

public static final java.lang.String JSON_PROPERTY_TRANSCRIPT_ID

See Also:

Constant Field Values

JSON_PROPERTY_EXTERNAL_IDS

public static final java.lang.String JSON_PROPERTY_EXTERNAL_IDS

See Also:

Constant Field Values

JSON_PROPERTY_ID

public static final java.lang.String JSON_PROPERTY_ID

See Also:

Constant Field Values

JSON_PROPERTY_TISSUE_CORRECTED_EXPRESSION

public static final java.lang.String JSON_PROPERTY_TISSUE_CORRECTED_EXPRESSION

See Also:

Constant Field Values

JSON_PROPERTY_GENE

public static final java.lang.String JSON_PROPERTY_GENE

See Also:

Constant Field Values

JSON_PROPERTY_PATIENT

public static final java.lang.String JSON_PROPERTY_PATIENT

See Also:

Constant Field Values

Constructor Detail

RnaSeq

public RnaSeq()

Method Detail

librarySize

public RnaSeq librarySize(@Nullable java.lang.Integer librarySize)

getLibrarySize

public @Nullable java.lang.Integer getLibrarySize()

setLibrarySize

public void setLibrarySize(@Nullable java.lang.Integer librarySize)

localization

public RnaSeq localization(@Nullable java.util.Set<BaseVariantLocalizationCoding> localization)

addLocalizationItem

public RnaSeq addLocalizationItem(BaseVariantLocalizationCoding localizationItem)

getLocalization

public @Nullable java.util.Set<BaseVariantLocalizationCoding> getLocalization()

setLocalization

public void setLocalization(@Nullable java.util.Set<BaseVariantLocalizationCoding> localization)

transcriptsPerMillion

public RnaSeq transcriptsPerMillion(java.math.BigDecimal transcriptsPerMillion)

getTranscriptsPerMillion

public java.math.BigDecimal getTranscriptsPerMillion()

setTranscriptsPerMillion

public void setTranscriptsPerMillion(java.math.BigDecimal transcriptsPerMillion)

cohortRanking

public RnaSeq cohortRanking(@Nullable java.lang.Integer cohortRanking)

getCohortRanking

public @Nullable java.lang.Integer getCohortRanking()

setCohortRanking

public void setCohortRanking(@Nullable java.lang.Integer cohortRanking)

rawCounts

public RnaSeq rawCounts(java.lang.Integer rawCounts)

getRawCounts

public java.lang.Integer getRawCounts()

setRawCounts

public void setRawCounts(java.lang.Integer rawCounts)

variant

public RnaSeq variant(Reference variant)

getVariant

public Reference getVariant()

setVariant

public void setVariant(Reference variant)

transcriptId

public RnaSeq transcriptId(@Nullable TranscriptId transcriptId)

getTranscriptId

public @Nullable TranscriptId getTranscriptId()

setTranscriptId

public void setTranscriptId(@Nullable TranscriptId transcriptId)

externalIds

public RnaSeq externalIds(@Nullable java.util.List<VariantExternalId> externalIds)

addExternalIdsItem

public RnaSeq addExternalIdsItem(VariantExternalId externalIdsItem)

getExternalIds

public @Nullable java.util.List<VariantExternalId> getExternalIds()

setExternalIds

public void setExternalIds(@Nullable java.util.List<VariantExternalId> externalIds)

id

public RnaSeq id(java.lang.String id)

getId

public java.lang.String getId()

setId

public void setId(java.lang.String id)

tissueCorrectedExpression

public RnaSeq tissueCorrectedExpression(@Nullable java.lang.Boolean tissueCorrectedExpression)

getTissueCorrectedExpression

public @Nullable java.lang.Boolean getTissueCorrectedExpression()

setTissueCorrectedExpression

public void setTissueCorrectedExpression(@Nullable java.lang.Boolean tissueCorrectedExpression)

gene

public RnaSeq gene(@Nullable Coding gene)

getGene

public @Nullable Coding getGene()

setGene

public void setGene(@Nullable Coding gene)

patient

public RnaSeq patient(Reference patient)

getPatient

public Reference getPatient()

setPatient

public void setPatient(Reference patient)

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

builder

public static RnaSeq.Builder builder()

toBuilder

public RnaSeq.Builder toBuilder()