Package dev.pcvolkmer.mv64e.model

Class Snv.Builder

java.lang.Object

dev.pcvolkmer.mv64e.model.Snv.Builder

Enclosing class:

Snv

public static class Snv.Builder
extends java.lang.Object

Constructor Summary

Constructors

Modifier	Constructor	Description
	Builder()
protected	Builder(Snv instance)

Method Summary

Modifier and Type	Method	Description
Snv.Builder	allelicFrequency(java.math.BigDecimal allelicFrequency)
Snv.Builder	altAllele(java.lang.String altAllele)
Snv	build()
Snv.Builder	chromosome(Chromosome chromosome)
Snv.Builder	dnaChange(java.lang.String dnaChange)
Snv.Builder	exonId(java.lang.String exonId)
Snv.Builder	externalIds(java.util.List<VariantExternalId> externalIds)
Snv.Builder	gene(Coding gene)
Snv.Builder	id(java.lang.String id)
Snv.Builder	interpretation(ClinVarCoding interpretation)
Snv.Builder	localization(java.util.Set<BaseVariantLocalizationCoding> localization)
Snv.Builder	patient(Reference patient)
Snv.Builder	position(CnvEndRange position)
Snv.Builder	proteinChange(java.lang.String proteinChange)
Snv.Builder	readDepth(java.lang.Integer readDepth)
Snv.Builder	refAllele(java.lang.String refAllele)
java.lang.String	toString()
Snv.Builder	transcriptId(TranscriptId transcriptId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Builder

public Builder()

Builder

protected Builder(Snv instance)

Method Detail

localization

public Snv.Builder localization(java.util.Set<BaseVariantLocalizationCoding> localization)

proteinChange

public Snv.Builder proteinChange(java.lang.String proteinChange)

interpretation

public Snv.Builder interpretation(ClinVarCoding interpretation)

transcriptId

public Snv.Builder transcriptId(TranscriptId transcriptId)

externalIds

public Snv.Builder externalIds(java.util.List<VariantExternalId> externalIds)

chromosome

public Snv.Builder chromosome(Chromosome chromosome)

id

public Snv.Builder id(java.lang.String id)

altAllele

public Snv.Builder altAllele(java.lang.String altAllele)

position

public Snv.Builder position(CnvEndRange position)

gene

public Snv.Builder gene(Coding gene)

exonId

public Snv.Builder exonId(java.lang.String exonId)

dnaChange

public Snv.Builder dnaChange(java.lang.String dnaChange)

patient

public Snv.Builder patient(Reference patient)

refAllele

public Snv.Builder refAllele(java.lang.String refAllele)

readDepth

public Snv.Builder readDepth(java.lang.Integer readDepth)

allelicFrequency

public Snv.Builder allelicFrequency(java.math.BigDecimal allelicFrequency)

build

public Snv build()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object