Package dev.pcvolkmer.mv64e.model

Class SomaticNgsReportResults

java.lang.Object

dev.pcvolkmer.mv64e.model.SomaticNgsReportResults

public class SomaticNgsReportResults
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	SomaticNgsReportResults.Builder

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	JSON_PROPERTY_BRCANESS
static java.lang.String	JSON_PROPERTY_COPY_NUMBER_VARIANTS
static java.lang.String	JSON_PROPERTY_DNA_FUSIONS
static java.lang.String	JSON_PROPERTY_HRD_SCORE
static java.lang.String	JSON_PROPERTY_RNA_FUSIONS
static java.lang.String	JSON_PROPERTY_RNA_SEQS
static java.lang.String	JSON_PROPERTY_SIMPLE_VARIANTS
static java.lang.String	JSON_PROPERTY_TMB
static java.lang.String	JSON_PROPERTY_TUMOR_CELL_CONTENT

Constructor Summary

Constructors

Constructor	Description
SomaticNgsReportResults()

Method Summary

Modifier and Type	Method	Description
SomaticNgsReportResults	addCopyNumberVariantsItem(Cnv copyNumberVariantsItem)
SomaticNgsReportResults	addDnaFusionsItem(DnaFusion dnaFusionsItem)
SomaticNgsReportResults	addRnaFusionsItem(RnaFusion rnaFusionsItem)
SomaticNgsReportResults	addRnaSeqsItem(RnaSeq rnaSeqsItem)
SomaticNgsReportResults	addSimpleVariantsItem(Snv simpleVariantsItem)
SomaticNgsReportResults	brcaness(@Nullable Brcaness brcaness)
static SomaticNgsReportResults.Builder	builder()
SomaticNgsReportResults	copyNumberVariants(@Nullable java.util.List<Cnv> copyNumberVariants)
SomaticNgsReportResults	dnaFusions(@Nullable java.util.List<DnaFusion> dnaFusions)
boolean	equals(java.lang.Object o)
@Nullable Brcaness	getBrcaness()
@Nullable java.util.List<Cnv>	getCopyNumberVariants()
@Nullable java.util.List<DnaFusion>	getDnaFusions()
@Nullable HrdScore	getHrdScore()
@Nullable java.util.List<RnaFusion>	getRnaFusions()
@Nullable java.util.List<RnaSeq>	getRnaSeqs()
@Nullable java.util.List<Snv>	getSimpleVariants()
@Nullable Tmb	getTmb()
@Nullable TumorCellContent	getTumorCellContent()
int	hashCode()
SomaticNgsReportResults	hrdScore(@Nullable HrdScore hrdScore)
SomaticNgsReportResults	rnaFusions(@Nullable java.util.List<RnaFusion> rnaFusions)
SomaticNgsReportResults	rnaSeqs(@Nullable java.util.List<RnaSeq> rnaSeqs)
void	setBrcaness(@Nullable Brcaness brcaness)
void	setCopyNumberVariants(@Nullable java.util.List<Cnv> copyNumberVariants)
void	setDnaFusions(@Nullable java.util.List<DnaFusion> dnaFusions)
void	setHrdScore(@Nullable HrdScore hrdScore)
void	setRnaFusions(@Nullable java.util.List<RnaFusion> rnaFusions)
void	setRnaSeqs(@Nullable java.util.List<RnaSeq> rnaSeqs)
void	setSimpleVariants(@Nullable java.util.List<Snv> simpleVariants)
void	setTmb(@Nullable Tmb tmb)
void	setTumorCellContent(@Nullable TumorCellContent tumorCellContent)
SomaticNgsReportResults	simpleVariants(@Nullable java.util.List<Snv> simpleVariants)
SomaticNgsReportResults	tmb(@Nullable Tmb tmb)
SomaticNgsReportResults.Builder	toBuilder()
java.lang.String	toString()
SomaticNgsReportResults	tumorCellContent(@Nullable TumorCellContent tumorCellContent)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

JSON_PROPERTY_RNA_SEQS

public static final java.lang.String JSON_PROPERTY_RNA_SEQS

See Also:

Constant Field Values

JSON_PROPERTY_TMB

public static final java.lang.String JSON_PROPERTY_TMB

See Also:

Constant Field Values

JSON_PROPERTY_SIMPLE_VARIANTS

public static final java.lang.String JSON_PROPERTY_SIMPLE_VARIANTS

See Also:

Constant Field Values

JSON_PROPERTY_HRD_SCORE

public static final java.lang.String JSON_PROPERTY_HRD_SCORE

See Also:

Constant Field Values

JSON_PROPERTY_COPY_NUMBER_VARIANTS

public static final java.lang.String JSON_PROPERTY_COPY_NUMBER_VARIANTS

See Also:

Constant Field Values

JSON_PROPERTY_TUMOR_CELL_CONTENT

public static final java.lang.String JSON_PROPERTY_TUMOR_CELL_CONTENT

See Also:

Constant Field Values

JSON_PROPERTY_DNA_FUSIONS

public static final java.lang.String JSON_PROPERTY_DNA_FUSIONS

See Also:

Constant Field Values

JSON_PROPERTY_RNA_FUSIONS

public static final java.lang.String JSON_PROPERTY_RNA_FUSIONS

See Also:

Constant Field Values

JSON_PROPERTY_BRCANESS

public static final java.lang.String JSON_PROPERTY_BRCANESS

See Also:

Constant Field Values

Constructor Detail

SomaticNgsReportResults

public SomaticNgsReportResults()

Method Detail

rnaSeqs

public SomaticNgsReportResults rnaSeqs(@Nullable java.util.List<RnaSeq> rnaSeqs)

addRnaSeqsItem

public SomaticNgsReportResults addRnaSeqsItem(RnaSeq rnaSeqsItem)

getRnaSeqs

public @Nullable java.util.List<RnaSeq> getRnaSeqs()

setRnaSeqs

public void setRnaSeqs(@Nullable java.util.List<RnaSeq> rnaSeqs)

tmb

public SomaticNgsReportResults tmb(@Nullable Tmb tmb)

getTmb

public @Nullable Tmb getTmb()

setTmb

public void setTmb(@Nullable Tmb tmb)

simpleVariants

public SomaticNgsReportResults simpleVariants(@Nullable java.util.List<Snv> simpleVariants)

addSimpleVariantsItem

public SomaticNgsReportResults addSimpleVariantsItem(Snv simpleVariantsItem)

getSimpleVariants

public @Nullable java.util.List<Snv> getSimpleVariants()

setSimpleVariants

public void setSimpleVariants(@Nullable java.util.List<Snv> simpleVariants)

hrdScore

public SomaticNgsReportResults hrdScore(@Nullable HrdScore hrdScore)

getHrdScore

public @Nullable HrdScore getHrdScore()

setHrdScore

public void setHrdScore(@Nullable HrdScore hrdScore)

copyNumberVariants

public SomaticNgsReportResults copyNumberVariants(@Nullable java.util.List<Cnv> copyNumberVariants)

addCopyNumberVariantsItem

public SomaticNgsReportResults addCopyNumberVariantsItem(Cnv copyNumberVariantsItem)

getCopyNumberVariants

public @Nullable java.util.List<Cnv> getCopyNumberVariants()

setCopyNumberVariants

public void setCopyNumberVariants(@Nullable java.util.List<Cnv> copyNumberVariants)

tumorCellContent

public SomaticNgsReportResults tumorCellContent(@Nullable TumorCellContent tumorCellContent)

getTumorCellContent

public @Nullable TumorCellContent getTumorCellContent()

setTumorCellContent

public void setTumorCellContent(@Nullable TumorCellContent tumorCellContent)

dnaFusions

public SomaticNgsReportResults dnaFusions(@Nullable java.util.List<DnaFusion> dnaFusions)

addDnaFusionsItem

public SomaticNgsReportResults addDnaFusionsItem(DnaFusion dnaFusionsItem)

getDnaFusions

public @Nullable java.util.List<DnaFusion> getDnaFusions()

setDnaFusions

public void setDnaFusions(@Nullable java.util.List<DnaFusion> dnaFusions)

rnaFusions

public SomaticNgsReportResults rnaFusions(@Nullable java.util.List<RnaFusion> rnaFusions)

addRnaFusionsItem

public SomaticNgsReportResults addRnaFusionsItem(RnaFusion rnaFusionsItem)

getRnaFusions

public @Nullable java.util.List<RnaFusion> getRnaFusions()

setRnaFusions

public void setRnaFusions(@Nullable java.util.List<RnaFusion> rnaFusions)

brcaness

public SomaticNgsReportResults brcaness(@Nullable Brcaness brcaness)

getBrcaness

public @Nullable Brcaness getBrcaness()

setBrcaness

public void setBrcaness(@Nullable Brcaness brcaness)

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

builder

public static SomaticNgsReportResults.Builder builder()

toBuilder

public SomaticNgsReportResults.Builder toBuilder()