summaryrefslogtreecommitdiff
path: root/src/test/kotlin/dev/dnpm/etl/processor
diff options
context:
space:
mode:
authorPaul-Christian Volkmer2023-12-14 12:48:54 +0100
committerPaul-Christian Volkmer2023-12-14 12:56:36 +0100
commit3cc4f8c1a443ce5c367a67611b3a7dfaf89db0c9 (patch)
tree0933e9355889322034837a4b2d8090b617f91f52 /src/test/kotlin/dev/dnpm/etl/processor
parent707bc55ab60fff7ee149a21eafabdd1e7a45a22c (diff)
test: add tests to ensure patient id pseudonym
This uses fake MTBFile JSON as described here: https://ibmi-intra.cs.uni-tuebingen.de/display/ZPM/bwHC+REST+API
Diffstat (limited to 'src/test/kotlin/dev/dnpm/etl/processor')
-rw-r--r--src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt64
1 files changed, 64 insertions, 0 deletions
diff --git a/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt
new file mode 100644
index 0000000..ac6ac07
--- /dev/null
+++ b/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt
@@ -0,0 +1,64 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program. If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.pseudonym
+
+import com.fasterxml.jackson.databind.ObjectMapper
+import de.ukw.ccc.bwhc.dto.MtbFile
+import org.assertj.core.api.Assertions.assertThat
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.extension.ExtendWith
+import org.mockito.ArgumentMatchers
+import org.mockito.Mock
+import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.doAnswer
+import org.mockito.kotlin.whenever
+import org.springframework.core.io.ClassPathResource
+
+const val FAKE_MTB_FILE_PATH = "fake_MTBFile.json"
+const val CLEAN_PATIENT_ID = "5dad2f0b-49c6-47d8-a952-7b9e9e0f7549"
+
+@ExtendWith(MockitoExtension::class)
+class ExtensionsTest {
+
+ private fun fakeMtbFile(): MtbFile {
+ val mtbFile = ClassPathResource(FAKE_MTB_FILE_PATH).inputStream
+ return ObjectMapper().readValue(mtbFile, MtbFile::class.java)
+ }
+
+ private fun MtbFile.serialized(): String {
+ return ObjectMapper().writeValueAsString(this)
+ }
+
+ @Test
+ fun shouldNotContainCleanPatientId(@Mock pseudonymizeService: PseudonymizeService) {
+ doAnswer {
+ it.arguments[0]
+ "PSEUDO-ID"
+ }.whenever(pseudonymizeService).patientPseudonym(ArgumentMatchers.anyString())
+
+ val mtbFile = fakeMtbFile()
+
+ mtbFile.pseudonymizeWith(pseudonymizeService)
+
+ assertThat(mtbFile.patient.id).isEqualTo("PSEUDO-ID")
+ assertThat(mtbFile.serialized()).doesNotContain(CLEAN_PATIENT_ID)
+ }
+
+} \ No newline at end of file