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/*
* This file is part of ETL-Processor
*
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken
* Copyright (c) 2025-2026 Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <https://www.gnu.org/licenses/>.
*/
package dev.dnpm.etl.processor.config
import dev.dnpm.etl.processor.security.Role
import org.springframework.boot.context.properties.ConfigurationProperties
import org.springframework.boot.context.properties.DeprecatedConfigurationProperty
@ConfigurationProperties(AppConfigProperties.NAME)
data class AppConfigProperties(
var transformations: List<TransformationProperties> = listOf(),
var maxRetryAttempts: Int = 3,
var duplicationDetection: Boolean = true,
var genomDeTestSubmission: Boolean = false,
var postInitialSubmissionBlock: Boolean = false,
) {
companion object {
const val NAME = "app"
}
}
@ConfigurationProperties(PseudonymizeConfigProperties.NAME)
data class PseudonymizeConfigProperties(
var generator: PseudonymGenerator = PseudonymGenerator.BUILDIN,
val prefix: String = "UNKNOWN",
) {
companion object {
const val NAME = "app.pseudonymize"
}
}
@ConfigurationProperties(GPasConfigProperties.NAME)
data class GPasConfigProperties(
val uri: String?,
val soapEndpoint: String?,
@get:DeprecatedConfigurationProperty(since = "0.12") val pidDomain: String?,
val patientDomain: String = pidDomain ?: "etl-processor",
val genomDeTanDomain: String = "ccdn",
val username: String?,
val password: String?,
) {
companion object {
const val NAME = "app.pseudonymize.gpas"
}
}
@ConfigurationProperties(ConsentConfigProperties.NAME)
data class ConsentConfigProperties(
var service: ConsentService = ConsentService.NONE,
) {
companion object {
const val NAME = "app.consent"
}
}
@ConfigurationProperties(GIcsConfigProperties.NAME)
data class GIcsConfigProperties(
/** Base URL to gICS System */
val uri: String?,
val username: String? = null,
val password: String? = null,
/**
* gICS specific system
* *
*/
val personIdentifierSystem: String =
"https://ths-greifswald.de/fhir/gics/identifiers/Patienten-ID",
/** Domain of broad consent resources */
val broadConsentDomainName: String = "MII",
/** Domain of Modelvorhaben 64e consent resources */
val genomDeConsentDomainName: String? = null,
/** Value to expect in case of positiv consent */
val broadConsentPolicyCode: String = "2.16.840.1.113883.3.1937.777.24.5.3.6",
/** Consent Policy which should be used for consent check */
val broadConsentPolicySystem: String = "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3",
/** Consent Policy uri for MII Broad Consent Version */
val broadConsentPolicyUri: String = "urn:oid:2.16.840.1.113883.3.1937.777.24.2.1790",
/** Value to expect in case of positiv consent */
val genomeDePolicyCode: String = "sequencing",
/** Consent Policy which should be used for consent check */
val genomeDePolicySystem: String =
"https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/GenomDE_MV",
/** Consent version (fixed version) */
val genomeDeConsentVersion: String = "2.0",
) {
companion object {
const val NAME = "app.consent.gics"
}
}
@ConfigurationProperties(RestTargetProperties.NAME)
data class RestTargetProperties(
val uri: String?,
val username: String?,
val password: String?,
) {
companion object {
const val NAME = "app.rest"
}
}
@ConfigurationProperties(KafkaProperties.NAME)
data class KafkaProperties(
val inputTopic: String?,
val outputTopic: String = "etl-processor",
val outputResponseTopic: String = "${outputTopic}_response",
val groupId: String = "${outputTopic}_group",
val servers: String = "",
) {
companion object {
const val NAME = "app.kafka"
}
}
@ConfigurationProperties(SecurityConfigProperties.NAME)
data class SecurityConfigProperties(
val adminUser: String?,
val adminPassword: String?,
val enableTokens: Boolean = false,
val enableOidc: Boolean = false,
val defaultNewUserRole: Role = Role.USER,
val users: List<UserProperties> = listOf(),
) {
companion object {
const val NAME = "app.security"
}
}
data class UserProperties(
val username: String,
val password: String,
)
enum class PseudonymGenerator {
BUILDIN,
GPAS,
}
enum class ConsentService {
NONE,
GICS,
GICS_GET_BC,
}
data class TransformationProperties(
val path: String,
val from: String,
val to: String,
)
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