1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
|
/*
* This file is part of ETL-Processor
*
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken
* Copyright (c) 2023-2026 Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <https://www.gnu.org/licenses/>.
*/
package dev.dnpm.etl.processor.web
import dev.dnpm.etl.processor.NotFoundException
import dev.dnpm.etl.processor.PatientPseudonym
import dev.dnpm.etl.processor.RequestId
import dev.dnpm.etl.processor.Tan
import dev.dnpm.etl.processor.config.AppConfigProperties
import dev.dnpm.etl.processor.monitoring.ReportService
import dev.dnpm.etl.processor.services.RequestService
import dev.dnpm.etl.processor.services.filter
import org.springframework.core.convert.converter.Converter
import org.springframework.data.domain.Pageable
import org.springframework.data.domain.Sort
import org.springframework.data.web.PageableDefault
import org.springframework.security.core.context.SecurityContextHolder
import org.springframework.stereotype.Component
import org.springframework.stereotype.Controller
import org.springframework.ui.Model
import org.springframework.web.bind.annotation.*
@Controller
@RequestMapping(path = ["/"])
class HomeController(
private val requestService: RequestService,
private val reportService: ReportService,
private val appConfigProperties: AppConfigProperties,
) {
@GetMapping
fun index(
@RequestParam(name = "q", required = false) queryString: String?,
@RequestParam(name = "f", required = false) filter: RequestService.Filter?,
@PageableDefault(page = 0, size = 10, sort = ["processedAt"], direction = Sort.Direction.DESC)
pageable: Pageable,
model: Model,
): String {
val isAdminOrUser =
SecurityContextHolder
.getContext()
.authentication
?.authorities
?.any { it.authority == "ROLE_USER" || it.authority == "ROLE_ADMIN" } == true
val requests =
// Only available for logged-in admins or users
if (null != queryString && isAdminOrUser) {
model.addAttribute("query", queryString)
if (null != filter) {
model.addAttribute("filter", filter.value)
requestService
.searchRequestLike(PatientPseudonym(queryString), Tan(queryString))
.filter(filter, pageable)
} else {
requestService
.searchRequestLike(PatientPseudonym(queryString), Tan(queryString), pageable)
}
} else {
requestService.findAll(pageable)
}
model.addAttribute("requests", requests)
model.addAttribute("postInitialSubmissionBlock", appConfigProperties.postInitialSubmissionBlock)
return "index"
}
@GetMapping(path = ["patient/{patientPseudonym}"])
fun byPatient(
@PathVariable patientPseudonym: PatientPseudonym,
@PageableDefault(page = 0, size = 10, sort = ["processedAt"], direction = Sort.Direction.DESC)
pageable: Pageable,
model: Model,
): String {
val requests = requestService.findRequestByPatientId(patientPseudonym, pageable)
model.addAttribute("patientPseudonym", patientPseudonym.value)
model.addAttribute("requests", requests)
model.addAttribute("postInitialSubmissionBlock", appConfigProperties.postInitialSubmissionBlock)
return "index"
}
@GetMapping(path = ["/report/{id}"])
fun report(
@PathVariable id: RequestId,
model: Model,
): String {
val request = requestService.findByUuid(id).orElse(null) ?: throw NotFoundException()
model.addAttribute("request", request)
model.addAttribute("issues", reportService.deserialize(request.report?.dataQualityReport))
model.addAttribute("postInitialSubmissionBlock", appConfigProperties.postInitialSubmissionBlock)
return "report"
}
@PutMapping(path = ["/submission/{id}/accepted"])
fun acceptSubmission(
@PathVariable id: RequestId,
model: Model,
): String {
val request = requestService.findByUuid(id).orElse(null) ?: throw NotFoundException()
request.submissionAccepted = true
val savedRequest = requestService.save(request)
model.addAttribute("request", savedRequest)
model.addAttribute("postInitialSubmissionBlock", appConfigProperties.postInitialSubmissionBlock)
return "fragments :: request"
}
@DeleteMapping(path = ["/submission/{id}/accepted"])
fun unacceptSubmission(
@PathVariable id: RequestId,
model: Model,
): String {
val request = requestService.findByUuid(id).orElse(null) ?: throw NotFoundException()
request.submissionAccepted = false
val savedRequest = requestService.save(request)
model.addAttribute("request", savedRequest)
model.addAttribute("postInitialSubmissionBlock", appConfigProperties.postInitialSubmissionBlock)
return "fragments :: request"
}
@Component
class FilterConverter : Converter<String, RequestService.Filter?> {
override fun convert(source: String): RequestService.Filter? {
return when (source) {
"all-dip" -> RequestService.Filter.ALL_DIP
"confirmed" -> RequestService.Filter.CONFIRMED
"unconfirmed" -> RequestService.Filter.UNCONFIRMED
else -> null
}
}
}
}
|
