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/*
* This file is part of ETL-Processor
*
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken
* Copyright (c) 2025-2026 Paul-Christian Volkmer, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <https://www.gnu.org/licenses/>.
*/
package dev.dnpm.etl.processor.input
import com.fasterxml.jackson.databind.ObjectMapper
import dev.dnpm.etl.processor.ArgProvider
import dev.dnpm.etl.processor.CustomMediaType
import dev.dnpm.etl.processor.consent.ConsentEvaluator
import dev.dnpm.etl.processor.consent.TtpConsentStatus
import dev.dnpm.etl.processor.input.Dnpm21MtbFile.Companion.buildMtb
import dev.dnpm.etl.processor.services.RequestProcessor
import dev.pcvolkmer.mv64e.mtb.*
import org.junit.jupiter.api.BeforeEach
import org.junit.jupiter.api.Nested
import org.junit.jupiter.api.Test
import org.junit.jupiter.api.extension.ExtendWith
import org.junit.jupiter.params.ParameterizedTest
import org.junit.jupiter.params.provider.Arguments
import org.junit.jupiter.params.provider.ArgumentsSource
import org.junit.jupiter.params.provider.ValueSource
import org.mockito.Mock
import org.mockito.Mockito.times
import org.mockito.Mockito.verify
import org.mockito.junit.jupiter.MockitoExtension
import org.mockito.kotlin.any
import org.mockito.kotlin.anyValueClass
import org.mockito.kotlin.whenever
import org.springframework.core.io.ClassPathResource
import org.springframework.test.web.servlet.MockMvc
import org.springframework.test.web.servlet.delete
import org.springframework.test.web.servlet.post
import org.springframework.test.web.servlet.setup.MockMvcBuilders
import java.time.Instant
import java.util.*
@ExtendWith(MockitoExtension::class)
class MtbFileRestControllerTest {
private val objectMapper = ObjectMapper()
@Nested
inner class RequestsForDnpmDataModel21 {
private lateinit var mockMvc: MockMvc
private lateinit var requestProcessor: RequestProcessor
@BeforeEach
fun setup(@Mock requestProcessor: RequestProcessor) {
this.requestProcessor = requestProcessor
val controller = MtbFileRestController(requestProcessor)
this.mockMvc = MockMvcBuilders.standaloneSetup(controller).build()
}
@Test
fun shouldRespondPostRequest() {
val mtbFileContent =
ClassPathResource("mv64e-mtb-fake-patient.json")
.inputStream
.readAllBytes()
.toString(Charsets.UTF_8)
whenever { requestProcessor.processMtbFile(any<Mtb>()) }.thenReturn(true)
mockMvc
.post("/mtb") {
content = mtbFileContent
contentType = CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON
}
.andExpect { status { isAccepted() } }
verify(requestProcessor, times(1)).processMtbFile(any<Mtb>())
}
@ParameterizedTest
@ArgumentsSource(Dnpm21MtbFile::class)
fun shouldProcessPostRequest(mtb: Mtb) {
whenever { requestProcessor.processMtbFile(any<Mtb>()) }.thenReturn(true)
mockMvc
.post("/mtbfile") {
content = objectMapper.writeValueAsString(mtb)
contentType = CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON
}
.andExpect { status { isAccepted() } }
}
@Test
fun shouldNotAcceptInvalidPostRequest() {
mockMvc
.post("/mtbfile") {
content = "{}"
contentType = CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON
}
.andExpect { status { isBadRequest() } }
}
@ParameterizedTest
@ValueSource(
strings =
[
"/mtbfile",
"/mtbfile/etl/patient-record",
"/mtb",
"/mtb/etl/patient-record",
"/api/mtbfile",
"/api/mtbfile/etl/patient-record",
"/api/mtb",
"/api/mtb/etl/patient-record",
]
)
fun shouldAcceptPostRequests(url: String) {
val mtb =
buildMtb(
MvhMetadata.builder()
.modelProjectConsent(
ModelProjectConsent.builder()
.provisions(
listOf(
Provision.builder()
.date(Date())
.type(ConsentProvision.PERMIT)
.purpose(ModelProjectConsentPurpose.SEQUENCING)
.build()
)
)
.build()
)
.build()
)
whenever { requestProcessor.processMtbFile(any<Mtb>()) }.thenReturn(true)
mockMvc
.post(url) {
content = objectMapper.writeValueAsString(mtb)
contentType = CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON
}
.andExpect { status { isAccepted() } }
}
@Test
fun shouldProcessDeleteRequest() {
mockMvc.delete("/mtbfile/TEST_12345678").andExpect { status { isAccepted() } }
verify(requestProcessor, times(1))
.processDeletion(
anyValueClass(),
org.mockito.kotlin.eq(TtpConsentStatus.UNKNOWN_CHECK_FILE),
)
}
@ParameterizedTest
@ValueSource(
strings =
[
"/mtbfile/TEST_12345678",
"/mtbfile/etl/patient-record/TEST_12345678",
"/mtbfile/etl/patient/TEST_12345678",
"/mtb/TEST_12345678",
"/mtb/etl/patient-record/TEST_12345678",
"/mtb/etl/patient/TEST_12345678",
"/api/mtbfile/TEST_12345678",
"/api/mtbfile/etl/patient-record/TEST_12345678",
"/api/mtbfile/etl/patient/TEST_12345678",
"/api/mtb/TEST_12345678",
"/api/mtb/etl/patient-record/TEST_12345678",
"/api/mtb/etl/patient/TEST_12345678",
]
)
fun shouldAcceptDeleteRequests(url: String) {
mockMvc.delete(url).andExpect { status { isAccepted() } }
}
}
}
class Dnpm21MtbFile :
ArgProvider(
// No Metadata and broad consent given => process
Arguments.of(buildMtb(null), TtpConsentStatus.BROAD_CONSENT_GIVEN, "process"),
// No model project consent and broad consent given => process
Arguments.of(
buildMtb(
MvhMetadata.builder()
.modelProjectConsent(ModelProjectConsent.builder().build())
.build()
)
),
// Model project consent given and no broad consent => process
Arguments.of(
buildMtb(
MvhMetadata.builder()
.modelProjectConsent(
ModelProjectConsent.builder()
.provisions(
listOf(
Provision.builder()
.date(Date())
.type(ConsentProvision.PERMIT)
.purpose(ModelProjectConsentPurpose.SEQUENCING)
.build()
)
)
.build()
)
.build()
)
),
// Model project consent given and broad consent given => process
Arguments.of(
buildMtb(
MvhMetadata.builder()
.modelProjectConsent(
ModelProjectConsent.builder()
.provisions(
listOf(
Provision.builder()
.date(Date())
.type(ConsentProvision.PERMIT)
.purpose(ModelProjectConsentPurpose.SEQUENCING)
.build()
)
)
.build()
)
.build()
)
),
) {
companion object {
fun buildMtb(metadata: MvhMetadata?): Mtb {
return Mtb.builder()
.patient(
Patient.builder()
.id("TEST_12345678")
.birthDate(Date.from(Instant.parse("2000-08-08T12:34:56Z")))
.gender(GenderCoding.builder().code(GenderCodingCode.MALE).build())
.build()
)
.metadata(metadata)
.episodesOfCare(
listOf(
MtbEpisodeOfCare.builder()
.id("1")
.patient(Reference.builder().id("TEST_12345678").build())
.build()
)
)
.build()
}
}
}
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