1 files changed, 100 insertions, 0 deletions
diff --git a/src/main/java/DNPM/dto/Variant.java b/src/main/java/DNPM/dto/Variant.java
new file mode 100644
index 0000000..f8d25c1
--- /dev/null
+++ b/src/main/java/DNPM/dto/Variant.java
@@ -0,0 +1,100 @@
+package DNPM.dto;
+
+import de.itc.onkostar.api.Procedure;
+
+import java.util.Optional;
+
+public class Variant {
+    private final Integer id;
+
+    private final String ergebnis;
+
+    private final String gen;
+
+    private final String exon;
+
+    private final String pathogenitaetsklasse;
+
+    private Variant(
+            final int id,
+            final String ergebnis,
+            final String gen,
+            final String exon,
+            final String pathogenitaetsklasse
+    ) {
+        this.id = id;
+        this.ergebnis = ergebnis;
+        this.gen = gen;
+        this.exon = exon;
+        this.pathogenitaetsklasse = pathogenitaetsklasse;
+    }
+
+    public Integer getId() {
+        return id;
+    }
+
+    public String getErgebnis() {
+        return ergebnis;
+    }
+
+    public String getGen() {
+        return gen;
+    }
+
+    public String getExon() {
+        return exon;
+    }
+
+    public String getPathogenitaetsklasse() {
+        return pathogenitaetsklasse;
+    }
+
+    public static Optional<Variant> fromProcedure(Procedure procedure) {
+        if (!"OS.Molekulargenetische Untersuchung".equals(procedure.getFormName())) {
+            return Optional.empty();
+        }
+
+        var ergebnis = procedure.getValue("Ergebnis");
+        var gene = procedure.getValue("Untersucht");
+        var exon = procedure.getValue("ExonInt");
+        var pathogenitaetsklasse = procedure.getValue("Pathogenitaetsklasse");
+
+        if (null == gene) {
+            return Optional.empty();
+        }
+
+        if (ergebnis.getString().equals("P")) {
+            return Optional.of(
+                    new Variant(
+                            procedure.getId(),
+                            "Einfache Variante (Mutation)",
+                            gene.getString().isBlank() ? "-" : gene.getString(),
+                            null == exon || exon.getString().isBlank() ? "-" : exon.getString(),
+                            null == pathogenitaetsklasse || pathogenitaetsklasse.getString().isBlank() ? "-" : pathogenitaetsklasse.getString()
+                    )
+            );
+        } else if (ergebnis.getString().equals("CNV")) {
+            return Optional.of(
+                    new Variant(
+                            procedure.getId(),
+                            "Copy Number Variation (CNV)",
+                            gene.getString().isBlank() ? "-" : gene.getString(),
+                            null == exon || exon.getString().isBlank() ? "-" : exon.getString(),
+                            null == pathogenitaetsklasse || pathogenitaetsklasse.getString().isBlank() ? "-" : pathogenitaetsklasse.getString()
+                    )
+            );
+        } else if (ergebnis.getString().equals("F")) {
+            return Optional.of(
+                    new Variant(
+                            procedure.getId(),
+                            "Fusion (Translokation Inversion Insertion)",
+                            gene.getString().isBlank() ? "-" : gene.getString(),
+                            null == exon || exon.getString().isBlank() ? "-" : exon.getString(),
+                            null == pathogenitaetsklasse || pathogenitaetsklasse.getString().isBlank() ? "-" : pathogenitaetsklasse.getString()
+                    )
+            );
+        } else {
+            return Optional.empty();
+        }
+    }
+}