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/*
* This file is part of onkostar-plugin-dnpm
*
* Copyright (C) 2023-2026 the original author or authors.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package dev.dnpm.oshelper.analyzer;
import dev.dnpm.oshelper.dto.Studie;
import dev.dnpm.oshelper.dto.Variant;
import dev.dnpm.oshelper.security.PermissionType;
import dev.dnpm.oshelper.security.PersonPoolBasedPermissionEvaluator;
import dev.dnpm.oshelper.services.StudienService;
import dev.dnpm.oshelper.services.molekulargenetik.MolekulargenetikFormService;
import de.itc.onkostar.api.Disease;
import de.itc.onkostar.api.IOnkostarApi;
import de.itc.onkostar.api.Procedure;
import de.itc.onkostar.api.analysis.AnalyzerRequirement;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.security.core.context.SecurityContextHolder;
import org.springframework.stereotype.Component;
import java.util.List;
import java.util.Map;
/**
* Diese Klasse implementiert ein Plugin, welches Funktionen für DNPM UF Einzelempfehlung bereitstellt.
*
* @since 0.2.0
*/
@Component
public class EinzelempfehlungAnalyzer extends BackendService {
private final static Logger logger = LoggerFactory.getLogger(EinzelempfehlungAnalyzer.class);
private final IOnkostarApi onkostarApi;
private final MolekulargenetikFormService molekulargenetikFormService;
private final StudienService studienService;
private final PersonPoolBasedPermissionEvaluator permissionEvaluator;
public EinzelempfehlungAnalyzer(
final IOnkostarApi onkostarApi,
final StudienService studienService,
final MolekulargenetikFormService molekulargenetikFormService,
final PersonPoolBasedPermissionEvaluator permissionEvaluator
) {
this.onkostarApi = onkostarApi;
this.studienService = studienService;
this.molekulargenetikFormService = molekulargenetikFormService;
this.permissionEvaluator = permissionEvaluator;
}
@Override
public String getDescription() {
return "Stellt Funktionen zur Nutzung im Therapieplan-Unterformular für Einzelempfehlungen bereit";
}
/**
* @deprecated
*/
@Override
public boolean isRelevantForDeletedProcedure() {
return false;
}
@Override
public boolean isRelevantForAnalyzer(Procedure procedure, Disease disease) {
return false;
}
@Override
public boolean isSynchronous() {
return false;
}
@Override
public AnalyzerRequirement getRequirement() {
return AnalyzerRequirement.PROCEDURE;
}
public List<Variant> getVariants(Map<String, Object> input) {
var procedureId = AnalyzerUtils.getRequiredId(input, "id");
if (procedureId.isEmpty()) {
return List.of();
}
var procedure = onkostarApi.getProcedure(procedureId.get());
if (null == procedure) {
return List.of();
}
if (permissionEvaluator.hasPermission(SecurityContextHolder.getContext().getAuthentication(), procedure, PermissionType.READ)) {
return molekulargenetikFormService.getVariants(procedure);
} else {
logger.error("Security: No permission to access procedure '{}'", procedure.getId());
return List.of();
}
}
/**
* Übergibt alle Studien, deren (Kurz-)Beschreibung oder NCT-Nummer den übergebenen Eingabewert <code>q</code> enthält
*
* <p>Wurde der Eingabewert nicht angegeben oder ist leer, werden alle Studien übergeben.
*
* <p>Beispiel zur Nutzung in einem Formularscript
* <pre>
* executePluginMethod(
* 'TherapieplanAnalyzer',
* 'getStudien',
* { q: 'NCT-12', inactive: true },
* (response) => console.log(response),
* false
* );
* </pre>
*
* @param input Map mit Eingabewerten
* @return Liste mit Studien
*/
public List<Studie> getStudien(Map<String, Object> input) {
var query = AnalyzerUtils.getRequiredValue(input, "q", String.class);
var inactive = AnalyzerUtils.getRequiredValue(input, "inactive", Boolean.class).orElse(false);
if (query.isEmpty() || query.get().isBlank()) {
if (inactive) {
return studienService.findAll();
}
return studienService.findActive();
}
if (inactive) {
return studienService.findByQuery(query.get());
}
return studienService.findActiveByQuery(query.get());
}
}
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