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/*
* This file is part of onkostar-plugin-dnpm
*
* Copyright (C) 2023-2026 the original author or authors.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package dev.dnpm.oshelper.dto;
import de.itc.onkostar.api.Item;
import de.itc.onkostar.api.Procedure;
import org.junit.jupiter.api.Test;
import static org.assertj.core.api.Assertions.assertThat;
public class VariantTest {
@Test
void testShouldMapVariantFromProcedureForSimpleVariant() {
var procedure = new Procedure(null);
procedure.setId(12345);
procedure.setFormName("OS.Molekulargenetische Untersuchung");
procedure.setValue("Ergebnis", new Item("Ergebnis", "P"));
procedure.setValue("Untersucht", new Item("Untersucht", "BRAF"));
procedure.setValue("ExonInt", new Item("ExonInt", 123));
procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2"));
var actual = Variant.fromProcedure(procedure);
assertThat(actual).isPresent();
assertThat(actual.get().getId()).isEqualTo(12345);
assertThat(actual.get().getErgebnis()).isEqualTo("Einfache Variante (Mutation)");
assertThat(actual.get().getGen()).isEqualTo("BRAF");
assertThat(actual.get().getExon()).isEqualTo("123");
assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");
}
@Test
void testShouldMapVariantFromProcedureForCopyNumberVariation() {
var procedure = new Procedure(null);
procedure.setId(12345);
procedure.setFormName("OS.Molekulargenetische Untersuchung");
procedure.setValue("Ergebnis", new Item("Ergebnis", "CNV"));
procedure.setValue("Untersucht", new Item("Untersucht", "BRAF"));
procedure.setValue("ExonInt", new Item("ExonInt", 123));
procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2"));
var actual = Variant.fromProcedure(procedure);
assertThat(actual).isPresent();
assertThat(actual.get().getId()).isEqualTo(12345);
assertThat(actual.get().getErgebnis()).isEqualTo("Copy Number Variation (CNV)");
assertThat(actual.get().getGen()).isEqualTo("BRAF");
assertThat(actual.get().getExon()).isEqualTo("123");
assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");
}
@Test
void testShouldMapVariantFromProcedureForFusion() {
var procedure = new Procedure(null);
procedure.setId(12345);
procedure.setFormName("OS.Molekulargenetische Untersuchung");
procedure.setValue("Ergebnis", new Item("Ergebnis", "F"));
procedure.setValue("Untersucht", new Item("Untersucht", "BRAF"));
procedure.setValue("ExonInt", new Item("ExonInt", 123));
procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2"));
var actual = Variant.fromProcedure(procedure);
assertThat(actual).isPresent();
assertThat(actual.get().getId()).isEqualTo(12345);
assertThat(actual.get().getErgebnis()).isEqualTo("Fusion (Translokation Inversion Insertion)");
assertThat(actual.get().getGen()).isEqualTo("BRAF");
assertThat(actual.get().getExon()).isEqualTo("123");
assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");
}
@Test
void testShouldNotMapVariantFromProcedureForUnknownVariant() {
var procedure = new Procedure(null);
procedure.setId(12345);
procedure.setFormName("OS.Molekulargenetische Untersuchung");
procedure.setValue("Ergebnis", new Item("Ergebnis", "X"));
procedure.setValue("Untersucht", new Item("Untersucht", "BRAF"));
procedure.setValue("ExonInt", new Item("ExonInt", 123));
procedure.setValue("Pathogenitaetsklasse", new Item("Pathogenitaetsklasse", "2"));
var actual = Variant.fromProcedure(procedure);
assertThat(actual).isEmpty();
}
@Test
void testShouldNotMapVariantFromUnknownProcedureForm() {
var procedure = new Procedure(null);
procedure.setId(12345);
procedure.setFormName("ABC.Irgendwas");
procedure.setValue("Testfeld", new Item("Testfeld", "T"));
var actual = Variant.fromProcedure(procedure);
assertThat(actual).isEmpty();
}
}
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