refactor: change package name

1 files changed, 158 insertions, 0 deletions

diff --git a/src/main/java/dev/dnpm/oshelper/analyzer/EinzelempfehlungAnalyzer.java b/src/main/java/dev/dnpm/oshelper/analyzer/EinzelempfehlungAnalyzer.java
new file mode 100644
index 0000000..49997ed
--- /dev/null
+++ b/src/main/java/dev/dnpm/oshelper/analyzer/EinzelempfehlungAnalyzer.java
@@ -0,0 +1,158 @@
+/*
+ * This file is part of onkostar-plugin-dnpm
+ *
+ * Copyright (c) 2025 the original author or authors.
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in all
+ * copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ * SOFTWARE.
+ */
+
+package dev.dnpm.oshelper.analyzer;
+
+import dev.dnpm.oshelper.dto.Studie;
+import dev.dnpm.oshelper.dto.Variant;
+import dev.dnpm.oshelper.security.PermissionType;
+import dev.dnpm.oshelper.security.PersonPoolBasedPermissionEvaluator;
+import dev.dnpm.oshelper.services.StudienService;
+import dev.dnpm.oshelper.services.molekulargenetik.MolekulargenetikFormService;
+import de.itc.onkostar.api.Disease;
+import de.itc.onkostar.api.IOnkostarApi;
+import de.itc.onkostar.api.Procedure;
+import de.itc.onkostar.api.analysis.AnalyzerRequirement;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import org.springframework.security.core.context.SecurityContextHolder;
+import org.springframework.stereotype.Component;
+
+import java.util.List;
+import java.util.Map;
+
+/**
+ * Diese Klasse implementiert ein Plugin, welches Funktionen für DNPM UF Einzelempfehlung bereitstellt.
+ *
+ * @since 0.2.0
+ */
+@Component
+public class EinzelempfehlungAnalyzer extends BackendService {
+
+    private final static Logger logger = LoggerFactory.getLogger(EinzelempfehlungAnalyzer.class);
+
+    private final IOnkostarApi onkostarApi;
+
+    private final MolekulargenetikFormService molekulargenetikFormService;
+
+    private final StudienService studienService;
+
+    private final PersonPoolBasedPermissionEvaluator permissionEvaluator;
+
+    public EinzelempfehlungAnalyzer(
+            final IOnkostarApi onkostarApi,
+            final StudienService studienService,
+            final MolekulargenetikFormService molekulargenetikFormService,
+            final PersonPoolBasedPermissionEvaluator permissionEvaluator
+    ) {
+        this.onkostarApi = onkostarApi;
+        this.studienService = studienService;
+        this.molekulargenetikFormService = molekulargenetikFormService;
+        this.permissionEvaluator = permissionEvaluator;
+    }
+
+    @Override
+    public String getDescription() {
+        return "Stellt Funktionen zur Nutzung im Therapieplan-Unterformular für Einzelempfehlungen bereit";
+    }
+
+    /**
+     * @deprecated
+     */
+    @Override
+    public boolean isRelevantForDeletedProcedure() {
+        return false;
+    }
+
+    @Override
+    public boolean isRelevantForAnalyzer(Procedure procedure, Disease disease) {
+        return false;
+    }
+
+    @Override
+    public boolean isSynchronous() {
+        return false;
+    }
+
+    @Override
+    public AnalyzerRequirement getRequirement() {
+        return AnalyzerRequirement.PROCEDURE;
+    }
+
+    public List<Variant> getVariants(Map<String, Object> input) {
+        var procedureId = AnalyzerUtils.getRequiredId(input, "id");
+
+        if (procedureId.isEmpty()) {
+            return List.of();
+        }
+
+        var procedure = onkostarApi.getProcedure(procedureId.get());
+        if (null == procedure) {
+            return List.of();
+        }
+
+        if (permissionEvaluator.hasPermission(SecurityContextHolder.getContext().getAuthentication(), procedure, PermissionType.READ)) {
+            return molekulargenetikFormService.getVariants(procedure);
+        } else {
+            logger.error("Security: No permission to access procedure '{}'", procedure.getId());
+            return List.of();
+        }
+    }
+
+    /**
+     * Übergibt alle Studien, deren (Kurz-)Beschreibung oder NCT-Nummer den übergebenen Eingabewert <code>q</code> enthält
+     *
+     * <p>Wurde der Eingabewert nicht angegeben oder ist leer, werden alle Studien übergeben.
+     *
+     * <p>Beispiel zur Nutzung in einem Formularscript
+     * <pre>
+     * executePluginMethod(
+     *   'TherapieplanAnalyzer',
+     *   'getStudien',
+     *   { q: 'NCT-12', inactive: true },
+     *   (response) => console.log(response),
+     *   false
+     * );
+     * </pre>
+     *
+     * @param input Map mit Eingabewerten
+     * @return Liste mit Studien
+     */
+    public List<Studie> getStudien(Map<String, Object> input) {
+        var query = AnalyzerUtils.getRequiredValue(input, "q", String.class);
+        var inactive = AnalyzerUtils.getRequiredValue(input, "inactive", Boolean.class).orElse(false);
+
+        if (query.isEmpty() || query.get().isBlank()) {
+            if (inactive) {
+                return studienService.findAll();
+            }
+            return studienService.findActive();
+        }
+        if (inactive) {
+            return studienService.findByQuery(query.get());
+        }
+        return studienService.findActiveByQuery(query.get());
+    }
+
+}